Publications: PROF John Jones

Jones JI, King RA, Sturrock AM, Wei H, Stevens JR, Lauridsen RB ( 2025 ) . Anadromous Brown Trout (<scp><i>Salmo trutta</i></scp>) Contribute Disproportionally to Recruitment: Insights From Genomics and Multi‐Tissue Stable Isotope Chemistry . Freshwater Biology vol. 70 , ( 8 ) Article e70078 ,

Stollewerk A, Kratina P, Sentis A, Chaparro‐Pedraza C, Decaestecker E, De Meester L, Eyice O, Govaert L et al. ( 2025 ) . Plasticity in climate change responses . Biological Reviews Article brv.70056 ,

Jones JI, Arnold A, Buchner D, Murphy JF, Childress JN, Beja P, Altermatt F, Meissner K et al. ( 2025 ) . Sources of uncertainty in <scp>DNA</scp> metabarcoding of whole communities: Implications for its use in biomonitoring . Methods in Ecology and Evolution vol. 16 , ( 8 ) 1658 - 1673 .

Marchant DJ, Perkins DM, Jones JI, Kratina P ( 2025 ) . Physiological and behavioural responses of aquatic organisms to microplastics and experimental warming . Environmental Pollution vol. 374 , Article 126182 , 126182 - 126182 .

Millard J, Skinner G, Bladon AJ, Cooke R, Outhwaite CL, Rodger JG, Barnes LA, Isip JE et al. ( 2025 ) . A Multithreat Meta‐Analytic Database for Understanding Insect Biodiversity Change . Diversity and Distributions vol. 31 , ( 5 ) Article e70025 ,

Cooke R, Outhwaite CL, Bladon AJ, Millard J, Rodger JG, Dong Z, Dyer EE, Edney S et al. ( 2025 ) . Integrating multiple evidence streams to understand insect biodiversity change . Science vol. 388 , ( 6742 ) Article eadq2110 ,

McKenzie M, Collins AL, Davis NG, Hodson R, Jones JI, Matthaei CD, Murphy JF, Wagenhoff A et al. ( 2025 ) . Stream Invertebrate Responses to Fine Sediment Depend on the Organic and Inorganic Components . Freshwater Biology vol. 70 , ( 3 ) Article e70022 ,

Martínez Rodríguez A, Kratina P, Jones JI ( 2025 ) . Different impacts of oil-based and bio-based microplastics on isotopic composition and stoichiometry of a model freshwater grazer . Environmental Research vol. 268 , Article 120782 , 120782 - 120782 .

Pacioglu O, Amarioarei A, Jones JI ( 2024 ) . Epigean-Hypogean Continuum concept . Karst Science Days Symposium Proceedings vol. 2024 , 1 - 4 .

Stubbington R, Longstaffe O, Sarremejane R, Bates P, Gething KJ, Jones JI, Kelly‐Quinn M, Laini A et al. ( 2024 ) . A Kick in the Headwaters: Evaluating a Macroinvertebrate Sampling Method for Ecological Condition Monitoring in Small Streams . River Research and Applications vol. 41 , ( 4 ) 808 - 819 .

Sinclair JS, Stubbington R, Schäfer RB, Barešová L, Bonada N, Csabai Z, Jones JI, Larrañaga A et al. ( 2024 ) . Ecological but Not Biological Traits of European Riverine Invertebrates Respond Consistently to Anthropogenic Impacts . Global Ecology and Biogeography vol. 33 , ( 12 ) Article e13931 ,

Martínez Rodríguez A, Kratina P, Jones JI ( 2024 ) . Microplastic pollution and nutrient enrichment shift the diet of freshwater macroinvertebrates . Environmental Pollution vol. 359 , Article 124540 , 124540 - 124540 .

Foulquier A, Datry T, Corti R, von Schiller D, Tockner K, Stubbington R, Gessner MO, Boyer F et al. ( 2024 ) . Unravelling large-scale patterns and drivers of biodiversity in dry rivers . Nature Communications vol. 15 , ( 1 ) Article 7233 ,

Welti EAR, Bowler DE, Sinclair JS, Altermatt F, Álvarez-Cabria M, Amatulli G, Angeler DG, Archambaud G et al. ( 2024 ) . Time series of freshwater macroinvertebrate abundances and site characteristics of European streams and rivers . Scientific Data vol. 11 , ( 1 ) Article 601 ,

Haubrock PJ, Soto I, Kourantidou M, Ahmed DA, Serhan Tarkan A, Balzani P, Bego K, Kouba A et al. ( 2024 ) . Understanding the complex dynamics of zebra mussel invasions over several decades in European rivers: drivers, impacts and predictions . Oikos vol. 2024 , ( 4 ) Article e10283 ,

McKenzie M, Brooks A, Callisto M, Collins AL, Durkota JM, Death RG, Jones JI, Linares MS et al. ( 2023 ) . Freshwater invertebrate responses to fine sediment stress: A multi‐continent perspective . Global Change Biology vol. 30 , ( 1 ) Article e17084 ,

Martínez Rodríguez A, Marchant DJ, Francelle P, Kratina P, Jones JI ( 2023 ) . Nutrient enrichment mediates the effect of biodegradable and conventional microplastics on macroinvertebrate communities . Environmental Pollution vol. 337 , Article 122511 , 122511 - 122511 .

Hallam J, Clare EL, Jones JI, Day JJ ( 2023 ) . High frequency environmental <scp>DNA</scp> metabarcoding provides rapid and effective monitoring of fish community dynamics . Environmental DNA vol. 5 , ( 6 ) 1623 - 1640 .

Skóra ME, Guðbergsson G, Copp GH, Jones JI ( 2023 ) . Evidence of successful recruitment of non‐native pink salmon <scp><i>Oncorhynchus gorbuscha</i></scp> in Iceland . Journal of Fish Biology vol. 104 , ( 1 ) 329 - 334 .

Nash LN, Kratina P, Recalde FC, Jones JI, Izzo T, Romero GQ ( 2023 ) . Tropical and temperate differences in the trophic structure and aquatic prey use of riparian predators . Ecology Letters vol. 26 , ( 12 ) 2122 - 2134 .

Haase P, Bowler DE, Baker NJ, Bonada N, Domisch S, Garcia Marquez JR, Heino J, Hering D et al. ( 2023 ) . The recovery of European freshwater biodiversity has come to a halt . Nature vol. 620 , ( 7974 ) 582 - 588 .

Haubrock PJ, Carneiro L, Macêdo RL, Balzani P, Soto I, Rasmussen JJ, Wiberg-Larsen P, Csabai Z et al. ( 2023 ) . Advancing our understanding of biological invasions with long-term biomonitoring data . Biological Invasions vol. 25 , ( 11 ) 3637 - 3649 .

Kelly-Quinn M, Biggs J, Jones JI, Riley WD ( 2023 ) . Preface: Small water bodies in the landscape . Hydrobiologia vol. 850 , ( 15 ) 3209 - 3210 .

Jones JI, Lloyd CEM, Murphy JF, Arnold A, Duerdoth CP, Hawczak A, Pretty JL, Johnes PJ et al. ( 2023 ) . What do macroinvertebrate indices measure? Stressor‐specific stream macroinvertebrate indices can be confounded by other stressors . Freshwater Biology vol. 68 , ( 8 ) 1330 - 1345 .

Soto I, Cuthbert RN, Ricciardi A, Ahmed DA, Altermatt F, Schäfer RB, Archambaud-Suard G, Bonada N et al. ( 2023 ) . The faunal Ponto-Caspianization of central and western European waterways . Biological Invasions vol. 25 , ( 8 ) 2613 - 2629 .

Marchant DJ, Martínez Rodríguez A, Francelle P, Jones JI, Kratina P ( 2023 ) . Contrasting the effects of microplastic types, concentrations and nutrient enrichment on freshwater communities and ecosystem functioning . Ecotoxicology and Environmental Safety vol. 255 , Article 114834 , 114834 - 114834 .

Soto I, Ahmed DA, Beidas A, Oficialdegui FJ, Tricarico E, Angeler DG, Amatulli G, Briski E et al. ( 2023 ) . Long-term trends in crayfish invasions across European rivers . Science of The Total Environment vol. 867 , Article 161537 , 161537 - 161537 .

Gupta A, Figueroa H. D, O'Gorman E, Jones I, Woodward G, Petchey OL ( 2023 ) . How many predator guts are required to predict trophic interactions? . Food Webs vol. 34 , Article e00269 , e00269 - e00269 .

Skóra ME, Jones JI, Youngson AF, Robertson S, Wells A, Lauridsen RB, Copp GH ( 2023 ) . Evidence of potential establishment of pink salmon <scp><i>Oncorhynchus gorbuscha</i></scp> in Scotland . Journal of Fish Biology vol. 102 , ( 3 ) 721 - 726 .

Horka P, Musilova Z, Holubova K, Jandova K, Kukla J, Rutkayova J, Jones JI ( 2023 ) . Anthropogenic nutrient loading affects both individual species and the trophic structure of river fish communities . Frontiers in Ecology and Evolution vol. 10 , Article 1076451 ,

Monteith D, Norris D, Murphy J, Jones JI, Juggins S, Shilland E, Battarbee R, Henderson G et al. ( 2022 ) . UK Upland Waters Monitoring Network data interpretation 1988-2019 . UK Centre for Ecology and Hydrology ( https://nora.nerc.ac.uk/id/eprint/534034 ),

Skóra M, Jones J, Copp G, Townhill B ( 2022 ) . Using the stable isotopes to evaluate potential impacts of pink salmon – PinkSIES project .

Kelly-Quinn M, Biggs JN, Brooks S, Fortuño P, Hegarty S, Jones JI, Regan F ( 2022 ) . Opportunities, approaches and challenges to the engagement of citizens in filling small water body data gaps . Hydrobiologia vol. 850 , ( 15 ) 3419 - 3439 .

Marsh JE, Jones JI, Lauridsen RB, Grace JB, Kratina P ( 2022 ) . Direct and indirect influences of macrophyte cover on abundance and growth of juvenile Atlantic salmon . Freshwater Biology vol. 67 , ( 11 ) 1861 - 1872 .

Milner VS, Jones JI, Maddock IP, Bunting GC ( 2022 ) . The hyporheic zone as an invertebrate refuge during a fine sediment disturbance event . Ecohydrology vol. 15 , ( 6 ) Article e2450 ,

Zhu Y, Jones JI, Collins AL, Zhang Y, Olde L, Rovelli L, Murphy JF, Heppell CM et al. ( 2022 ) . Separating natural from human enhanced methane emissions in headwater streams . Nature Communications vol. 13 , ( 1 ) Article 3810 ,

Soto I, Cuthbert RN, Ricciardi A, Ahmed DA, Altermatt F, Archambaud-Suard G, Bonada N, Cañedo-Argüelles M et al. ( 2022 ) . The faunal Ponto-Caspianization of European waterways .

Marchant DJ, Iwan Jones J, Zemelka G, Eyice O, Kratina P ( 2022 ) . Do microplastics mediate the effects of chemicals on aquatic organisms? . Aquatic Toxicology vol. 242 , Article 106037 , 106037 - 106037 .

Monteith DT, Shilland EM, Norris DA, Keenan P, Jones JI, Millidine K, Murphy J, Pretty J et al. ( 2022 ) . UK Upland Waters Monitoring Network (UKUWMN) Progress Report to Welsh Government and Natural Resources Wales. April 2021 - March 2022. Llyn Llagi, Llyn Cwm Mynach, Afon Hafren and Afon Gwy: Annual Summary .

Marsh JE, Lauridsen RB, Gregory SD, Kratina P, Scott LJ, Cooling D, Jones JI ( 2021 ) . High summer macrophyte cover increases abundance, growth, and feeding of juvenile Atlantic salmon . Ecological Applications vol. 32 , ( 2 ) Article e2492 ,

Milner VS, Maddock IP, Jones I, Bunting GC ( 2021 ) . Do legacy effects of deposited fine sediment influence the ecological response of drifting invertebrates to a fine sediment pulse? . Aquatic Sciences vol. 83 , ( 4 ) Article 70 ,

Hallam J, Clare EL, Jones JI, Day JJ ( 2021 ) . Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods . Environmental DNA vol. 3 , ( 6 ) 1247 - 1266 .

Pacioglu O, Amărioarei A, Duțu LT, Plăvan G, Ițcuș C, Plăvan O, Strungaru Ș-A, Păun A et al. ( 2021 ) . The structure and functionality of communities and food webs in streams along the epigean–hypogean continuum: unifying ecological stoichiometry and metabolic theory of ecology . Aquatic Sciences vol. 83 , ( 4 ) Article 63 ,

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2021 ) . Aquatic Macrophyte Change in the UK Upland Waters Monitoring Network . Conference: Natural History Museum Student Conference 2021

Arnold A, Murphy JF, Pretty JL, Duerdoth CP, Smith BD, Rainbow PS, Spencer KL, Collins AL et al. ( 2021 ) . Accumulation of trace metals in freshwater macroinvertebrates across metal contamination gradients . Environmental Pollution vol. 276 , Article 116721 , 116721 - 116721 .

Perkins DM, Durance I, Jackson M, Jones JI, Lauridsen RB, Layer-Dobra K, Reiss J, Thompson MSA et al. ( 2021 ) . Systematic variation in food web body-size structure linked to external subsidies . Biology Letters vol. 17 , ( 3 ) Article rsbl.2020.0798 ,

Neves MP, Kratina P, Delariva RL, Jones JI, Fialho CB ( 2021 ) . Seasonal feeding plasticity can facilitate coexistence of dominant omnivores in Neotropical streams . Reviews in Fish Biology and Fisheries vol. 31 , ( 2 ) 417 - 432 .

Jones JI, Vdovchenko A, Cooling D, Murphy JF, Arnold A, Pretty JL, Spencer KL, Markus AA et al. ( 2020 ) . Systematic Analysis of the Relative Abundance of Polymers Occurring as Microplastics in Freshwaters and Estuaries . International Journal of Environmental Research and Public Health vol. 17 , ( 24 ) 9304 - 9304 .

Armitage PD, Murphy JF, Pretty JL, Davy-Bowker J, Tapia G, Arnold A, Jones JI ( 2020 ) . Faunal community change in the sediment impacted Bovington Stream and the River Frome (Dorset, UK) between 1998 and 2016 . SN Applied Sciences vol. 2 , ( 11 ) Article 1913 ,

Wilkes MA, Edwards F, Jones JI, Murphy JF, England J, Friberg N, Hering D, Poff NL et al. ( 2020 ) . Trait‐based ecology at large scales: Assessing functional trait correlations, phylogenetic constraints and spatial variability using open data . Global Change Biology vol. 26 , ( 12 ) 7255 - 7267 .

Jones J, Murphy JF, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments\nEvidence Review 2\nWhat are the sources of the microplastics found in freshwater environments? . Defra ( London ), report no. WT15112.ER2 ,

Jones J, Murphy J, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Evidence Reviews on Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments Evidence Review 3 What is/are the impact(s) of microplastics on freshwater and estuarine biota? . Defra ( London ), report no. WT15112.ER3 ,

Jones J, Murphy JF, Arnold A, Pretty J, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Evidence Reviews on Analysis, Prevalence & Impact of Microplastics in Freshwater and Estuarine Environments. Evidence Review 1 Are the current sampling and analytical methods scientifically robust and appropriate? . Defra ( Defra, London ), report no. WT15112.ER1 ,

Jones JI, Murphy JF, Arnold A, Pretty JL, Spencer K, Markus AA, Vethaak AD ( 2020 ) . Analysis, prevalence and impact of microplastics in freshwater and estuarine environments: an evidence review .

Makiola A, Compson ZG, Baird DJ, Barnes MA, Boerlijst SP, Bouchez A, Brennan G, Bush A et al. ( 2020 ) . Key Questions for Next-Generation Biomonitoring . Frontiers in Environmental Science vol. 7 , Article 197 ,

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2020 ) . Aquatic Macrophyte Change in the UK Upland Waters Monitoring Network . Conference: Natural History Museum, London. PhD Student Conference. 2nd/3rd March 2020. Poster presentation.

Jones JI, Murphy JF, Collins AL, Spencer KL, Rainbow PS, Arnold A, Pretty JL, Moorhouse AML et al. ( 2020 ) . The Impact of Metal-Rich Sediments Derived from Mining on Freshwater Stream Life . Reviews of Environmental Contamination and Toxicology , vol. 248 ,

Shilland EM, Monteith DT, Jones JI, Jungblut AD, Mackay AW ( 2020 ) . What has driven long-term aquatic plant change in upland lakes and streams? Do plant eDNA and sediment DNA match known assemblages and historical change? . Conference: Engaging Sustainability. NERC Joint DTP Conference. 7th/8th September 2020. Poster presentation.

Marsh JE, Lauridsen RB, Gregory SD, Beaumont WRC, Scott LJ, Kratina P, Jones JI ( 2019 ) . Above parr: Lowland river habitat characteristics associated with higher juvenile Atlantic salmon (<i>Salmo salar</i>) and brown trout (<i>S. trutta</i>) densities . Ecology of Freshwater Fish vol. 29 , ( 4 ) 542 - 556 .

Pacioglu O, Theissinger K, Alexa A, Samoilă C, Sîrbu O-I, Schrimpf A, Zubrod JP, Schulz R et al. ( 2019 ) . Multifaceted implications of the competition between native and invasive crayfish: a glimmer of hope for the native’s long-term survival . Biological Invasions vol. 22 , ( 2 ) 827 - 842 .

JONES JI, Spencer K, Rainbow PS, Collins AL, Murphy J, Arnold A, Duerdoth CP, Pretty JL et al. ( 2019 ) . The Ecological Impacts of Contaminated Sediment from Abandoned Metal Mines . Department for Environment, Food and Rural Affairs ( London, UK ), report no. WT0970 ,

Blackman R, Mächler E, Altermatt F, Arnold A, Beja P, Boets P, Egeter B, Elbrecht V et al. ( 2019 ) . Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments . Metabarcoding and Metagenomics vol. 3 , Article e34735 ,

Pacioglu O, Zubrod JP, Schulz R, Jones JI, Pârvulescu L ( 2019 ) . Two is better than one: combining gut content and stable isotope analyses to infer trophic interactions between native and invasive species . Hydrobiologia vol. 839 , ( 1 ) 25 - 35 .

Jones JI, Murphy JF, Collins AL, Spencer KL, Rainbow PS, Arnold A, Pretty JL, Moorhouse AML et al. ( 2019 ) . The Impact of Metal-Rich Sediments Derived from Mining on Freshwater Stream Life . 111 - 189 .

Lloyd CEM, Johnes PJ, Freer JE, Carswell AM, Jones JI, Stirling MW, Hodgkinson RA, Richmond C et al. ( 2019 ) . Determining the sources of nutrient flux to water in headwater catchments: Examining the speciation balance to inform the targeting of mitigation measures . Science of The Total Environment vol. 648 , 1179 - 1200 .

Wilkes MA, Gittins JR, Mathers KL, Mason R, Casas‐Mulet R, Vanzo D, Mckenzie M, Murray‐Bligh J et al. ( 2018 ) . Physical and biological controls on fine sediment transport and storage in rivers . WIREs Water vol. 6 , ( 2 ) Article e1331 ,

Riley WD, Potter ECE, Biggs J, Collins AL, Jarvie HP, Jones JI, Kelly-Quinn M, Ormerod SJ et al. ( 2018 ) . Small Water Bodies in Great Britain and Ireland: Ecosystem function, human-generated degradation, and options for restorative action . Science of The Total Environment vol. 645 , 1598 - 1616 .

Pawlowski J, Kelly-Quinn M, Altermatt F, Apothéloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A et al. ( 2018 ) . The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems . Science of The Total Environment vol. 637-638 , 1295 - 1310 .

Perkins DM, Durance I, Edwards FK, Grey J, Hildrew AG, Jackson M, Jones JI, Lauridsen RB et al. ( 2018 ) . Bending the rules: exploitation of allochthonous resources by a top‐predator modifies size‐abundance scaling in stream food webs . Ecology Letters vol. 21 , ( 12 ) 1771 - 1780 .

Hering D, Borja A, Jones JI, Pont D, Boets P, Bouchez A, Bruce K, Drakare S et al. ( 2018 ) . Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive . Water Research vol. 138 , 192 - 205 .

Datry T, Foulquier A, Corti R, von Schiller D, Tockner K, Mendoza-Lera C, Clément JC, Gessner MO et al. ( 2018 ) . Author Correction: A global analysis of terrestrial plant litter dynamics in non-perennial waterways . Nature Geoscience vol. 11 , ( 7 ) 542 - 542 .

Datry T, Foulquier A, Corti R, von Schiller D, Tockner K, Mendoza-Lera C, Clément JC, Gessner MO et al. ( 2018 ) . A global analysis of terrestrial plant litter dynamics in non-perennial waterways . Nature Geoscience vol. 11 , ( 7 ) 497 - 503 .

Inman A, Winter M, Wheeler R, Vrain E, Lovett A, Collins A, Jones I, Johnes P et al. ( 2018 ) . An exploration of individual, social and material factors influencing water pollution mitigation behaviours within the farming community . Land Use Policy vol. 70 , 16 - 26 .

Sear DA, Pattison I, Collins AL, Smallman DJ, Jones JI, Naden PS ( 2017 ) . The magnitude and significance of sediment oxygen demand in gravel spawning beds for the incubation of salmonid embryos . River Research and Applications vol. 33 , ( 10 ) 1642 - 1654 .

Murphy JF, Jones JI, Arnold A, Duerdoth CP, Pretty JL, Naden PS, Sear DA, Collins AL ( 2017 ) . Can macroinvertebrate biological traits indicate fine‐grained sediment conditions in streams? . River Research and Applications vol. 33 , ( 10 ) 1606 - 1617 .

Zhang Y, Collins AL, Jones JI, Johnes PJ, Inman A, Freer JE ( 2017 ) . The potential benefits of on-farm mitigation scenarios for reducing multiple pollutant loadings in prioritised agri-environment areas across England . Environmental Science &amp; Policy vol. 73 , 100 - 114 .

Zhang Y, Collins AL, Johnes PJ, Jones JI ( 2017 ) . Projected impacts of increased uptake of source control mitigation measures on agricultural diffuse pollution emissions to water and air . Land Use Policy vol. 62 , 185 - 201 .

Jones JI, Douthwright TA, Arnold A, Duerdoth CP, Murphy JF, Edwards FK, Pretty JL ( 2017 ) . Diatoms as indicators of fine sediment stress . Ecohydrology vol. 10 , ( 5 ) Article e1832 ,

Growns I, Murphy JF, Jones JI ( 2017 ) . The effects of altered flow and bed sediment on macroinvertebrates in stream mesocosms . Marine and Freshwater Research vol. 68 , ( 3 ) 496 - 496 .

Nichols SJ, Barmuta LA, Chessman BC, Davies PE, Dyer FJ, Harrison ET, Hawkins CP, Jones I et al. ( 2017 ) . The imperative need for nationally coordinated bioassessment of rivers and streams . Marine and Freshwater Research vol. 68 , ( 4 ) 599 - 599 .

Leese F, Altermatt F, Bouchez A, Ekrem T, Hering D, Meissner K, Mergen P, Pawlowski J et al. ( 2016 ) . DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe . Research Ideas and Outcomes vol. 2 , e11321 - e11321 .

Naura M, Hornby DD, Collins AL, Sear DA, Hill C, Jones JI, Naden PS ( 2016 ) . Mapping the combined risk of agricultural fine sediment input and accumulation for riverine ecosystems across England and Wales . Ecological Indicators vol. 70 , 209 - 221 .

Jones JI, Murphy JF, Anthony SG, Arnold A, Blackburn JH, Duerdoth CP, Hawczak A, Hughes GO et al. ( 2016 ) . Do agri‐environment schemes result in improved water quality? . Journal of Applied Ecology vol. 54 , ( 2 ) 537 - 546 .

Frame JL, Jones JI, Ormerod SJ, Sadler JP, Ledger ME ( 2016 ) . Biological barriers to restoration: testing the biotic resistance hypothesis in an upland stream recovering from acidification . Hydrobiologia vol. 777 , ( 1 ) 161 - 170 .

Goodwin JCA, Andrew King R, Iwan Jones J, Ibbotson A, Stevens JR ( 2016 ) . A small number of anadromous females drive reproduction in a brown trout (<i>Salmo trutta</i>) population in an English chalk stream . Freshwater Biology vol. 61 , ( 7 ) 1075 - 1089 .

Collins AL, Zhang YS, Winter M, Inman A, Jones JI, Johnes PJ, Cleasby W, Vrain E et al. ( 2016 ) . Tackling agricultural diffuse pollution: What might uptake of farmer-preferred measures deliver for emissions to water and air? . Science of The Total Environment vol. 547 , 269 - 281 .

Naden PS, Murphy JF, Old GH, Newman J, Scarlett P, Harman M, Duerdoth CP, Hawczak A et al. ( 2016 ) . Understanding the controls on deposited fine sediment in the streams of agricultural catchments . Science of The Total Environment vol. 547 , 366 - 381 .

Sear DA, Jones JI, Collins AL, Hulin A, Burke N, Bateman S, Pattison I, Naden PS ( 2016 ) . Does fine sediment source as well as quantity affect salmonid embryo mortality and development? . Science of The Total Environment vol. 541 , 957 - 968 .

Murphy JF, Jones JI, Pretty JL, Duerdoth CP, Hawczak A, Arnold A, Blackburn JH, Naden PS et al. ( 2015 ) . Development of a biotic index using stream macroinvertebrates to assess stress from deposited fine sediment . Freshwater Biology vol. 60 , ( 10 ) 2019 - 2036 .

Murphy JF, Jones JI, Pretty JL, Duerdoth CP, Hawczak A, Arnold A, Blackburn JH, Naden PS et al. ( 2015 ) . Development of a biotic index using stream macroinvertebrates to assess stress from deposited fine sediment . Freshwater Biology vol. 60 , ( 10 ) 2019 - 2036 .

Jones I, Growns I, Arnold A, McCall S, Bowes M ( 2015 ) . The effects of increased flow and fine sediment on hyporheic invertebrates and nutrients in stream mesocosms . Freshwater Biology vol. 60 , ( 4 ) 813 - 826 .

Pattison I, Sear DA, Collins AL, Jones JI, Naden PS . Interactions between fine-grained sediment delivery, river bed deposition and salmonid spawning success . Proceedings of the International Association of Hydrological Sciences . vol. 367 , 199 - 206 .

Johns T, Jones JI, Knight L, Maurice L, Wood P, Robertson A ( 2015 ) . Regional-scale drivers of groundwater faunal distributions . Freshwater Science vol. 34 , ( 1 ) 316 - 328 .

Duerdoth CP, Arnold A, Murphy JF, Naden PS, Scarlett P, Collins AL, Sear DA, Jones JI ( 2015 ) . Assessment of a rapid method for quantitative reach-scale estimates of deposited fine sediment in rivers . Geomorphology vol. 230 , 37 - 50 .

Jones I, Growns I, Arnold A, McCall S, Bowes M ( 2015 ) . The effects of increased flow and fine sediment on hyporheic invertebrates and nutrients in stream mesocosms . Freshwater Biology vol. 60 , ( 4 ) 813 - 826 .

Collins AL, Williams LJ, Zhang YS, Marius M, Dungait JAJ, Smallman DJ, Dixon ER, Stringfellow A et al. ( 2014 ) . Sources of sediment-bound organic matter infiltrating spawning gravels during the incubation and emergence life stages of salmonids . Agriculture, Ecosystems &amp; Environment vol. 196 , 76 - 93 .

Lloyd CEM, Freer JE, Collins AL, Johnes PJ, Jones JI ( 2014 ) . Methods for detecting change in hydrochemical time series in response to targeted pollutant mitigation in river catchments . Journal of Hydrology vol. 514 , 297 - 312 .

Lauridsen RB, Edwards FK, Cross WF, Woodward G, Hildrew AG, Jones JI ( 2014 ) . Consequences of inferring diet from feeding guilds when estimating and interpreting consumer–resource stoichiometry . Freshwater Biology vol. 59 , ( 7 ) 1497 - 1508 .

Collins AL, Williams LJ, Zhang YS, Marius M, Dungait JAJ, Smallman DJ, Dixon ER, Stringfellow A et al. ( 2013 ) . Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England . Science of The Total Environment vol. 456-457 , 181 - 195 .

Jones JI, Duerdoth CP, Collins AL, Naden PS, Sear DA ( 2012 ) . Interactions between diatoms and fine sediment . Hydrological Processes vol. 28 , ( 3 ) 1226 - 1237 .

Sear DA, Pattison I, Collins AL, Newson MD, Jones JI, Naden PS, Carling PA ( 2012 ) . Factors controlling the temporal variability in dissolved oxygen regime of salmon spawning gravels . Hydrological Processes vol. 28 , ( 1 ) 86 - 103 .

Lauridsen RB, Edwards FK, Bowes MJ, Woodward G, Hildrew AG, Ibbotson AT, Jones JI ( 2012 ) . Consumer–resource elemental imbalances in a nutrient-rich stream . Freshwater Science vol. 31 , ( 2 ) 408 - 422 .

JONES JI ( 2012 ) . Contribution of the Welsh agri-environment schemes to the maintenance and improvement of soil and water quality, and to the mitigation of climate change. Welsh Government, Agri-Environment Monitoring and Technical Services Contract Lot 3: Soil, Water and Climate Change (Ecosystems), No. 183/2007/08, Final Report .

Collins AL, Foster I, Zhang Y, Gooday R, Lee D, Sear D, Naden P, Jones I ( 2012 ) . Assessing \modern background sediment delivery to rivers\ across England and Wales and its use for catchment management . EROSION AND SEDIMENT YIELDS IN THE CHANGING ENVIRONMENT . vol. 356 , 125 - + .

Jones I ( 2011 ) . B. R. Moss: Ecology of freshwaters—a view for the twenty-first century (4th edn.) . Journal of Paleolimnology vol. 47 , ( 1 ) 163 - 164 .

JONES JI ( 2011 ) . Advances in Ecological Research . Advances in Ecological Research , Academic Press

Jones JI, Murphy JF, Collins AL, Sear DA, Naden PS, Armitage PD ( 2011 ) . THE IMPACT OF FINE SEDIMENT ON MACRO‐INVERTEBRATES . River Research and Applications vol. 28 , ( 8 ) 1055 - 1071 .

Jones JI, Collins AL, Naden PS, Sear DA ( 2011 ) . THE RELATIONSHIP BETWEEN FINE SEDIMENT AND MACROPHYTES IN RIVERS . River Research and Applications vol. 28 , ( 7 ) 1006 - 1018 .

Collins AL, Naden PS, Sear DA, Jones JI, Foster IDL, Morrow K ( 2011 ) . Sediment targets for informing river catchment management: international experience and prospects . Hydrological Processes vol. 25 , ( 13 ) 2112 - 2129 .

Kemp P, Sear D, Collins A, Naden P, Jones I ( 2011 ) . The impacts of fine sediment on riverine fish . Hydrological Processes vol. 25 , ( 11 ) 1800 - 1821 .

Foster IDL, Collins AL, Naden PS, Sear DA, Jones JI, Zhang Y ( 2011 ) . The potential for paleolimnology to determine historic sediment delivery to rivers . Journal of Paleolimnology vol. 45 , ( 2 ) 287 - 306 .

YVON‐DUROCHER G, MONTOYA JM, WOODWARD GUY, JONES JI, TRIMMER M ( 2011 ) . Warming increases the proportion of primary production emitted as methane from freshwater mesocosms . Global Change Biology vol. 17 , ( 2 ) 1225 - 1234 .

Gilljam D, Thierry A, Edwards FK, Figueroa D, Ibbotson AT, Jones JI, Lauridsen RB, Petchey OL et al. ( 2011 ) . Seeing Double: . 67 - 133 .

Yvon-Durocher G, Jones JI, Trimmer M, Woodward G, Montoya JM ( 2010 ) . Warming alters the metabolic balance of ecosystems . PHILOS T R SOC B vol. 365 , ( 1549 ) 2117 - 2126 .

Horka P, Ibbotson A, Jones JI, Cove RJ, Scott LJ ( 2010 ) . Validation of scale-age determination in European grayling Thymallus thymallus using tag-recapture analysis . J FISH BIOL vol. 77 , ( 1 ) 153 - 161 .

RAWCLIFFE R, SAYER CD, WOODWARD GUY, GREY J, DAVIDSON TA, IWAN JONES J ( 2010 ) . Back to the future: using palaeolimnology to infer long‐term changes in shallow lake food webs . Freshwater Biology vol. 55 , ( 3 ) 600 - 613 .

SAYER CD, DAVIDSON TA, JONES JI, LANGDON PG ( 2010 ) . Combining contemporary ecology and palaeolimnology to understand shallow lake ecosystem change . Freshwater Biology vol. 55 , ( 3 ) 487 - 499 .

SAYER CD, DAVIDSON TA, JONES JI ( 2010 ) . Seasonal dynamics of macrophytes and phytoplankton in shallow lakes: a eutrophication‐driven pathway from plants to plankton? . Freshwater Biology vol. 55 , ( 3 ) 500 - 513 .

BERESFORD AL, JONES JI ( 2010 ) . Weedbeds and big bugs: the importance of scale in detecting the influence of nutrients and predation on macroinvertebrates in plant‐dominated shallow lakes . Freshwater Biology vol. 55 , ( 3 ) 514 - 530 .

Jones JI, Davy-Bowker J, Murphy JF, Pretty JL ( 2010 ) . Ecological monitoring and assessment of pollution in rivers . Ecology of Industrial Pollution , Cambridge University Press

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Chapter 6 Individual-Based Food Webs Species Identity, Body Size and Sampling Effects . Integrative Ecology: From Molecules to Ecosystems , vol. 43 , Elsevier

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Individual-Based Food Webs . Elsevier

Woodward G, Blanchard J, Lauridsen RB, Edwards FK, Jones JI, Figueroa D, Warren PH, Petchey OL ( 2010 ) . Individual-Based Food Webs: Species Identity, Body Size and Sampling Effects . ADVANCES IN ECOLOGICAL RESEARCH, VOL 43: INTEGRATIVE ECOLOGY: FROM MOLECULES TO ECOSYSTEMS vol. 43 , 211 - 266 .

Johnson AC, Acreman MC, Dunbar MJ, Feist SW, Giacomello AM, Gozlan RE, Hinsley SA, Ibbotson AT et al. ( 2009 ) . The British river of the future: How climate change and human activity might affect two contrasting river ecosystems in England . Science of The Total Environment vol. 407 , ( 17 ) 4787 - 4798 .

Kulíšková P, Horký P, Slavík O, Jones JI ( 2009 ) . Factors influencing movement behaviour and home range size in ide <i>Leuciscus idus</i> . Journal of Fish Biology vol. 74 , ( 6 ) 1269 - 1279 .

Edwards EK, Lauridsen RB, Duerdoth CP, Jones JI ( 2009 ) . Dry and ash free dry mass to length relationships of bullhead (Cottus gobio L.) (vol 172, pg 315, 2008) . FUND APPL LIMNOL vol. 174 , ( 4 ) 369 - 369 .

Ings TC, Montoya JM, Bascompte J, Bluthgen N, Brown L, Dormann CF, Edwards F, Figueroa D et al. ( 2009 ) . Ecological networks - beyond food webs . J ANIM ECOL vol. 78 , ( 1 ) 253 - 269 .

Edwards FKL, Armand L, Vincent HM, Jones IJ ( 2009 ) . The relationship between length, mass and preservation time for three species of freshwater leeches (Hirudinea) . Fundamental and Applied Limnology vol. 173 , ( 4 ) 321 - 327 .

Edwards FKL ( 2008 ) . Dry and ash-free dry mass to length relationships of bullhead (Cottus gobio L.) . Fundamental and Applied Limnology vol. 172 , ( 4 ) 315 - 316 .

NEALE MW, DUNBAR MJ, JONES JI, IBBOTSON AT ( 2008 ) . A comparison of the relative contributions of temporal and spatial variation in the density of drifting invertebrates in a Dorset (U.K.) chalk stream . Freshwater Biology vol. 53 , ( 8 ) 1513 - 1523 .

Jones JI, Jeppesen E ( 2007 ) . Body size and trophic cascades in lakes . Body Size: The Structure and Function of Aquatic Ecosystems , Cambridge University Press

KIBRIYA S, IWAN JONES J ( 2007 ) . Nutrient availability and the carnivorous habit in <i>Utricularia vulgaris</i> . Freshwater Biology vol. 52 , ( 3 ) 500 - 509 .

Sayer CD, Hoare DJ, Simpson GL, Henderson ACG, Liptrot ER, Jackson MJ, Appleby PG, Boyle JF et al. ( 2006 ) . TBT causes regime shift in shallow lakes . ENVIRON SCI TECHNOL vol. 40 , ( 17 ) 5269 - 5275 .

Sayer CD, Hoare DJ, Simpson GL, Henderson ACG, Liptrot ER, Jackson MJ, Appleby PG, Boyle JF et al. ( 2006 ) . TBT Causes Regime Shift in Shallow Lakes . Environmental Science &amp; Technology vol. 40 , ( 17 ) 5269 - 5275 .

Hilton J, O'Hare M, Bowes MJ, Jones JI ( 2006 ) . How green is my river? A new paradigm of eutrophication in rivers . Science of The Total Environment vol. 365 , ( 1-3 ) 66 - 83 .

Burks RL, Mulderij G, Gross E, Jones I, Jacobsen L, Jeppesen E, Van Donk E ( 2006 ) . Center stage: The crucial role of macrophytes in regulating trophic interactions in shallow lake wetlands . WETLANDS: FUNCTIONING, BIODIVERSITY CONSERVATION, AND RESTORATION . vol. 191 , 37 - + .

Iwan Jones J ( 2005 ) . The metabolic cost of bicarbonate use in the submerged plant Elodea nuttallii . Aquatic Botany vol. 83 , ( 1 ) 71 - 81 .

Berlow EL, Neutel A, Cohen JE, De Ruiter PC, Ebenman B, Emmerson M, Fox JW, Jansen VAA et al. ( 2004 ) . Interaction strengths in food webs: issues and opportunities . Journal of Animal Ecology vol. 73 , ( 3 ) 585 - 598 .

Jones I ( 2004 ) . Tarns of the Central Lake District . Freshwater Biology vol. 49 , ( 5 ) 678 - 678 .

Iwan Jones J, Moss B, Eaton JW, Young JO ( 2003 ) . Do submerged aquatic plants influence periphyton community composition for the benefit of invertebrate mutualists? . Freshwater Biology vol. 43 , ( 4 ) 591 - 604 .

Jones JI, Li W, Maberly SC ( 2003 ) . Area, altitude and aquatic plant diversity . Ecography vol. 26 , ( 4 ) 411 - 420 .

Jones JI, Sayer CD ( 2003 ) . DOES THE FISH–INVERTEBRATE–PERIPHYTON CASCADE PRECIPITATE PLANT LOSS IN SHALLOW LAKES? . Ecology vol. 84 , ( 8 ) 2155 - 2167 .

Jones JI, Waldron S ( 2003 ) . Combined stable isotope and gut contents analysis of food webs in plant‐dominated, shallow lakes . Freshwater Biology vol. 48 , ( 8 ) 1396 - 1407 .

Gjerløv C, Hildrew AG, Jones JI ( 2003 ) . Mobility of stream invertebrates in relation to disturbance and refugia: a test of habitat templet theory . Journal of the North American Benthological Society vol. 22 , ( 2 ) 207 - 223 .

WOODWARD GUY, JONES JI, HILDREW AG ( 2002 ) . Community persistence in Broadstone Stream (U.K.) over three decades . Freshwater Biology vol. 47 , ( 8 ) 1419 - 1435 .

Jones JI, Young JO, Eaton JW, Moss B ( 2002 ) . The influence of nutrient loading, dissolved inorganic carbon and higher trophic levels on the interaction between submerged plants and periphyton . Journal of Ecology vol. 90 , ( 1 ) 12 - 24 .

Jones JI, Moss B, Eaton JW, Haynes G, Hardwick K ( 2002 ) . Plants and their periphyton - analysis of a relationship . INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY, VOL 27, PT 7, PROCEEDINGS . vol. 27 , 3892 - 3892 .

Iwan Jones J, Eaton JW, Hardwick K ( 2000 ) . The influence of periphyton on boundary layer conditions: a pH microelectrode investigation . Aquatic Botany vol. 67 , ( 3 ) 191 - 206 .

Wan Jones JI ( 2000 ) . Do submerged aquatic plants influence periphyton community composition for the benefit of invertebrate mutualists? . Freshwater Biology vol. 43 , ( 4 ) 591 - 591 .

Jones JI, Eaton JW, Hardwick K ( 2000 ) . The effect of changing environmental variables in the surrounding water on the physiology of Elodea nuttallii . Aquatic Botany vol. 66 , ( 2 ) 115 - 129 .

Jones JI, Young JO, Haynes GM, Moss B, Eaton JW, Hardwick KJ ( 1999 ) . Do submerged aquatic plants influence their periphyton to enhance the growth and reproduction of invertebrate mutualists? . Oecologia vol. 120 , ( 3 ) 463 - 474 .

Jones JI, Moss B, Young JO ( 1998 ) . Interactions between Periphyton, Nonmolluscan Invertebrates, and Fish in Standing Freshwaters . Ecological Studies , Springer New York

Jones JI, Eaton JW, Hardwick K, Moss B, Young JO ( 1998 ) . Plants and snails; Mutualism or merely coexistence? . INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY, VOL 26, PT 4 . vol. 26 , 2082 - 2082 .

Jones JI, Hardwick K, Eaton JW ( 1996 ) . Diurnal carbon restrictions on the photosynthesis of dense stands of Elodea nuttallii (Planch.) St. John . Hydrobiologia . vol. 340 , 11 - 16 .

JONES JI, EATON JW, HARDWICK K ( 1993 ) . PHYSIOLOGICAL PLASTICITY IN ELODEA-NUTTALLII (PLANCH) ST-JOHN . JOURNAL OF AQUATIC PLANT MANAGEMENT . vol. 31 , 88 - 94 .