Publications: DR Pedro Rodriguez Cutillas

Badshah II, Cutillas PR ( 2025 ) . Functional Pathway Inference Analysis (FPIA) . 203 - 229 .

Branson N, Cutillas PR, Bessant C ( 2025 ) . Understanding the sources of performance in deep drug response models reveals insights and improvements . Bioinformatics vol. 41 , ( Supplement_1 ) i142 - i149 .

Cho H-J, Smith J, Switzer CH, Louka E, Charles RL, Prysyazhna O, Schroder E, Fernandez-Caggiano M et al. ( 2025 ) . SFX-01 is therapeutic against myeloproliferative disorders caused by activating mutations in Shp2 . EMBO Molecular Medicine vol. 17 , ( 8 ) 2115 - 2136 .

Zach R, Annis M, Martin-Guerrero SM, Alatawi A, Chia KH, Meredith M, Osborn K, Peter N et al. ( 2025 ) . The Balance between B55α and Greatwall expression levels predicts sensitivity to Greatwall inhibition in cancer cells .

Rosell A, Krygowska AA, Alcón Pérez M, Cuesta C, Voisin M-B, de Paz J, Sanz-Fraile H, Rajeeve V et al. ( 2025 ) . RAS–p110α signalling in macrophages is required for effective inflammatory response and resolution of inflammation . eLife vol. 13 , Article RP94590 ,

Kaya F, Bewicke-Copley F, Miettinen JJ, Casado P, Leddy E, Deniz Ö, Lavallée V-P, Philippe C et al. ( 2025 ) . DEK::NUP214 acts as an XPO1-dependent transcriptional activator of essential leukemia genes . Leukemia vol. 39 , ( 6 ) 1526 - 1531 .

Casado P, Marfa S, Hadi MM, Gerdes H, Martin-Guerrero SM, Miraki-Moud F, Rajeeve V, Cutillas PR ( 2025 ) . Phosphoproteomics identifies determinants of PAK inhibitor sensitivity in leukaemia cells . Cell Communication and Signaling vol. 23 , ( 1 ) Article 135 ,

Lumeau A, Pfuderer PL, De Angelis S, Scarth JA, Guscott MA, Shaikh N, Copley FB, Gerdes H et al. ( 2025 ) . High levels of DNA replication initiation factors indicate ATRi sensitivity via excessive origin firing .

Martín-Guerrero SM, Martín-Estebané M, Lara Ordóñez AJ, Cánovas M, Martín-Oliva D, González-Maeso J, Cutillas PR, López-Giménez JF ( 2025 ) . Maternal immune activation imprints translational dysregulation and differential MAP2 phosphorylation in descendant neural stem cells . Molecular Psychiatry vol. 30 , ( 7 ) 2994 - 3007 .

de Brito M, Rajeeve V, Cutillas P, O’Toole EA ( 2024 ) . 252 Phosphoproteomic Analysis of Callus Scrapings to Provide Insights into Pachyonychia Congenita Pathogenesis . Journal of Investigative Dermatology vol. 144 , ( 12 ) S271 - S271 .

Burggraef MJ, Oxley A, Zaidi NA, Cutillas PR, Gaffney PRJ, Livingston AG ( 2024 ) . Exactly defined molecular weight poly(ethylene glycol) allows for facile identification of PEGylation sites on proteins . Nature Communications vol. 15 , ( 1 ) Article 9814 ,

Borek WE, Nobre L, Pedicona SF, Campbell AE, Christopher JA, Nawaz N, Perkins DN, Moreno-Cardoso P et al. ( 2024 ) . Phosphoproteomics predict response to midostaurin plus chemotherapy in independent cohorts of FLT3-mutated acute myeloid leukaemia . eBioMedicine vol. 108 , Article 105316 , 105316 - 105316 .

Dembitz V, Lawson H, Burt R, Natani S, Philippe C, James SC, Atkinson S, Durko J et al. ( 2024 ) . Stearoyl-CoA desaturase inhibition is toxic to acute myeloid leukemia displaying high levels of the de novo fatty acid biosynthesis and desaturation . Leukemia vol. 38 , ( 11 ) 2395 - 2409 .

Conduit SE, Pearce W, Bhamra A, Bilanges B, Bozal-Basterra L, Foukas LC, Cobbaut M, Castillo SD et al. ( 2024 ) . A class I PI3K signalling network regulates primary cilia disassembly in normal physiology and disease . Nature Communications vol. 15 , ( 1 ) Article 7181 ,

Çubuk C, Lau R, Cutillas P, Rajeeve V, John CR, Surace AEA, Hands R, Fossati-Jimack L et al. ( 2024 ) . Phosphoproteomic profiling of early rheumatoid arthritis synovium reveals active signalling pathways and differentiates inflammatory pathotypes . Arthritis Research & Therapy vol. 26 , ( 1 ) Article 120 ,

Martín-Guerrero SM, Martín-Estebané M, Lara Ordóñez AJ, Cánovas M, Martín-Oliva D, González-Maeso J, Cutillas PR, López-Giménez JF ( 2024 ) . Maternal Immune Activation imprints translational dysregulation and differential MAP2 phosphorylation in descendant neural stem cells .

Branson N, Cutillas PR, Bessant C ( 2024 ) . Understanding the Sources of Performance in Deep Drug Response Models Reveals Insights and Improvements .

Lau R, Cubuk C, Rajeeve V, Cutillas P, Hands R, Fossati-Jimack L, Surace A, Lewis M et al. ( 2024 ) . OP0218 SYNOVIAL PHOSPHOPROTEOME ANALYSIS OF LATE-STAGE RHEUMATOID ARTHRITIS PATIENTS (R4RA TRIAL) IDENTIFIES SIGNALLING PATHWAYS ASSOCIATED WITH PATHOTYPE AND RESPONSE TO RITUXIMAB AND TOCILIZUMAB . Annals of the Rheumatic Diseases . vol. 83 , 12 - 12 .

Hirani P, McDermott J, Rajeeve V, Cutillas PR, Jones JL, Pennington DJ, Wight TN, Santamaria S et al. ( 2024 ) . Versican Associates with Tumor Immune Phenotype and Limits T-cell Trafficking via Chondroitin Sulfate . Cancer Research Communications vol. 4 , ( 4 ) 970 - 985 .

Wright JL, Jiang Y, Nayar S, Rajeeve V, Cutillas PR, Li H, Richardson WD ( 2024 ) . The INO80 chromatin remodeling complex regulates histone H2A.Z mobility and the G1-S transition in oligodendrocyte precursors .

Castellano E, Rosell A, Krygowska A, Alcón MAP, Voisin M-B, de Paz J, Sanz-Fraile H, Rajeeve V et al. ( 2024 ) . RAS-p110α signalling in macrophages is required for effective inflammatory response and resolution of inflammation .

Branson N, Cutillas PR, Bessant C ( 2023 ) . Comparison of multiple modalities for drug response prediction with learning curves using neural networks and XGBoost . Bioinformatics Advances vol. 4 , ( 1 ) Article vbad190 ,

Koenis DS, de Matteis R, Rajeeve V, Cutillas P, Dalli J ( 2023 ) . Efferocyte‐Derived MCTRs Metabolically Prime Macrophages for Continual Efferocytosis via Rac1‐Mediated Activation of Glycolysis . Advanced Science vol. 11 , ( 7 ) Article 2304690 ,

Zheng J, Bewicke-Copley F, Vermeulen C, Casado P, Kaya F, Demeulemeester J, Guscott M, Krizsán S et al. ( 2023 ) . Allele-Specific Expression of Leukemia Genes Is Associated with Pathogenicity in Poor Risk AML . Blood vol. 142 , ( Supplement 1 ) 1389 - 1389 .

Kaya F, Bewicke-Copley F, Casado Izquierdo P, Zheng J, Miettinen JJ, Khan N, Krizsán S, Saad JJ et al. ( 2023 ) . The XPO1-FOXC1-HOX Functional Axis Opens New Therapeutic Avenues to Treat DEK-NUP214 AML Patients . Blood vol. 142 , ( Supplement 1 ) 4302 - 4302 .

Barry S, Rai A, Haworth O, Rajeeve V, Cutillas P, Korbonits M ( 2023 ) . Integrated multi-omics data reveals distinct regulatory signatures and signaling pathways of aryl hydrocarbon receptor interacting protein (AIP) knockout cells . Endocrine Abstracts

Di Mambro A, Arroyo-Berdugo Y, Fioretti T, Randles M, Cozzuto L, Rajeeve V, Cevenini A, Austin MJ et al. ( 2023 ) . SET-PP2A complex as a new therapeutic target in KMT2A (MLL) rearranged AML . Oncogene vol. 42 , ( 50 ) 3670 - 3683 .

Yang M, Zhou X, Pearce SWA, Yang Z, Chen Q, Niu K, Liu C, Luo J et al. ( 2023 ) . Causal Role for Neutrophil Elastase in Thoracic Aortic Dissection in Mice . Arteriosclerosis, Thrombosis, and Vascular Biology vol. 43 , ( 10 ) 1900 - 1920 .

Castellano E, Rosell A, Krygowska A, Alcón MAP, Voisin M-B, de Paz J, Rajeeve V, Berral-González A et al. ( 2023 ) . RAS-p110α signalling in macrophages is required for effective inflammatory response and resolution of inflammation .

Dokal A, Borek WE, Nobre L, Federico Pedicona S, Wrench B, Gallipoli P, Arruda A, Campbell AE et al. ( 2023 ) . S124: PHOSPHOPROTEOMICS ACCURATELY PREDICTS RESPONSES TO MIDOSTAURIN PLUS CHEMOTHERAPY IN TWO INDEPENDENT COHORTS OF FLT3 MUTANT-POSITIVE ACUTE MYELOID LEUKAEMIA . HemaSphere vol. 7 , ( S3 ) e3920765 - e3920765 .

Dembitz V, Lawson H, Burt R, Philippe C, James SC, Atkinson S, Durko J, Wang LM et al. ( 2023 ) . SCD inhibition preferentially eradicates AML displaying high de novo fatty acid desaturation and synergizes with chemotherapy .

Kassuhn W, Cutillas PR, Kessler M, Sehouli J, Braicu EI, Blüthgen N, Kulbe H ( 2023 ) . In Silico Analysis Predicts Nuclear Factors NR2F6 and YAP1 as Mesenchymal Subtype-Specific Therapeutic Targets for Ovarian Cancer Patients . Cancers vol. 15 , ( 12 ) 3155 - 3155 .

Sarker D, Pedicona F, Zen Y, Borek WE, Khorsandi SE, Christopher J, Karampera C, Dowe T et al. ( 2023 ) . Identification of novel phosphoproteomic biomarkers in patients with advanced hepatocellular carcinoma (HCC) . Journal of Clinical Oncology vol. 41 , ( 16_suppl ) e15155 - e15155 .

Puttock EH, Tyler EJ, Manni M, Maniati E, Butterworth C, Burger Ramos M, Peerani E, Hirani P et al. ( 2023 ) . Extracellular matrix educates an immunoregulatory tumor macrophage phenotype found in ovarian cancer metastasis . Nature Communications vol. 14 , ( 1 ) Article 2514 ,

Barry S, Haworth O, Rajeeve V, Cutillas P, Korbonits M ( 2023 ) . Phosphoproteomics analysis of aryl hydrocarbon receptor interacting protein (AIP) knockout cells reveals AIP-mediated kinase signalling cascades . Endocrine Abstracts

Hirani P, Alonge KM, Pennington DJ, Cutillas PR, Wight TN, Pearce OM ( 2023 ) . Abstract 5841: Exploring the role of versican in immune exclusion within triple negative breast cancer . Cancer Research vol. 83 , ( 7_Supplement ) 5841 - 5841 .

Casado P, Cutillas PR ( 2023 ) . Proteomic Characterization of Acute Myeloid Leukemia for Precision Medicine . Molecular & Cellular Proteomics vol. 22 , ( 4 ) Article 100517 , 100517 - 100517 .

Clayton NS, Carter EP, Fearon AE, Heward JA, Rodríguez Fernández L, Boughetane L, Wilkes EH, Cutillas PR et al. ( 2023 ) . HDAC Inhibition Restores Response to HER2-Targeted Therapy in Breast Cancer via PHLDA1 Induction . International Journal of Molecular Sciences vol. 24 , ( 7 ) 6228 - 6228 .

Higgins L, Gerdes H, Cutillas PR ( 2023 ) . Principles of phosphoproteomics and applications in cancer research . Biochemical Journal vol. 480 , ( 6 ) 403 - 420 .

Dullovi A, Ozgencil M, Rajvee V, Tse WY, Cutillas PR, Martin SA, Hořejší Z ( 2023 ) . Microtubule-associated proteins MAP7 and MAP7D1 promote DNA double-strand break repair in the G1 cell cycle phase . iScience vol. 26 , ( 3 ) Article 106107 , 106107 - 106107 .

Grey W, Atkinson S, Rix B, Casado P, Ariza-McNaughton L, Hawley C, Sopoena ML, Bridge KS et al. ( 2023 ) . The CKS1/CKS2 Proteostasis Axis Is Crucial to Maintain Hematopoietic Stem Cell Function . HemaSphere vol. 7 , ( 3 ) e853 - e853 .

Casado P, Rio-Machin A, Miettinen JJ, Bewicke-Copley F, Rouault-Pierre K, Krizsan S, Parsons A, Rajeeve V et al. ( 2023 ) . Integrative phosphoproteomics defines two biologically distinct groups of KMT2A rearranged acute myeloid leukaemia with different drug response phenotypes . Signal Transduction and Targeted Therapy vol. 8 , ( 1 ) Article 80 ,

El-Mansi S, Robinson CL, Kostelnik KB, McCormack JJ, Mitchell TP, Lobato-Márquez D, Rajeeve V, Cutillas P et al. ( 2023 ) . Proximity proteomics identifies septins and PAK2 as decisive regulators of actomyosin-mediated expulsion of von Willebrand factor . Blood vol. 141 , ( 8 ) 930 - 944 .

Mambro AD, Arroyo Y, Fioretti T, Randles M, Cozzuto L, Rajeeve V, Cevenini A, Austin MJ et al. ( 2023 ) . SET-PP2A complex as a new therapeutic target in KMT2A (MLL) rearranged AML .

Prieto-Fernandez L, Villaronga MDLA, Hermida-Prado F, Hijazi M, Montoro-Jimenez I, Pevida M, Llames S, Rodrigo JP et al. ( 2023 ) . Driving role of head and neck cancer cell secretome on the invasion of stromal fibroblasts: Mechanistic insights by phosphoproteomics . Biomedicine & Pharmacotherapy vol. 158 , Article 114176 , 114176 - 114176 .

( 2023 ) . Low HER2 expression in normal breast epithelium enables dedifferentiation and malignant transformation via chromatin opening . Disease Models & Mechanisms vol. 16 , ( 2 ) Article dmm049894 ,

Dullovi A, Ozgencil M, Rajvee V, Tse WY, Cutillas PR, Martin SA, Hořejší Z ( 2023 ) . Microtubule-associated proteins MAP7 and MAP7D1 promote DNA double strand break repair in the G1 cell cycle phase .

Basanta CDLAC, Bazzi M, Hijazi M, Bessant C, Cutillas PR ( 2023 ) . Community detection in empirical kinase networks identifies new potential members of signalling pathways . PLoS Comput. Biol. vol. 19 , Article 6 ,

Lopez-Gimenez JF, Martin-Estebane M, Lara-Ordonez AJ, Martin-Guerrero S, Cutillas PR, Martin-Oliva D, Gonzalez-Maesso J ( 2023 ) . Generation and proteomic characterization of a neural stem cell model based on maternal immune activation (MIA) to be applied in psychopharmacology research . BRITISH JOURNAL OF PHARMACOLOGY . vol. 180 , 986 - 987 .

Sarker D, Pedicona F, Zen Y, Borek WE, Khorsandi SE, Christopher J, Karampera C, Dowe T et al. ( 2023 ) . Identification of novel phosphoproteomic biomarkers in patients with advanced hepatocellular carcinoma (HCC) . JOURNAL OF CLINICAL ONCOLOGY . vol. 41 ,

Badshah II, Cutillas PR ( 2022 ) . Systematic identification of biochemical networks in cancer cells by functional pathway inference analysis . Bioinformatics vol. 39 , ( 1 ) Article btac769 ,

Rio-Machin A, Bewicke-Copley F, Zheng J, Casado Izquierdo P, Miettinen JJ, Khan N, Demeulemeester J, Krizsán S et al. ( 2022 ) . Deep Multi-Omics Profiling in Cytogenetically Poor-Risk AML . Blood vol. 140 , ( Supplement 1 ) 1030 - 1032 .

Dembitz V, Lawson H, Philippe C, Burt RJ, James S, Magee ASM, Woodley K, Durko J et al. ( 2022 ) . Inhibition of Stearoyl-CoA Desaturase Has Anti-Leukemic Properties in Acute Myeloid Leukemia . Blood vol. 140 , ( Supplement 1 ) 3058 - 3060 .

Casado P, Rio-Machin A, Miettinen JJ, Bewicke-Copley F, Rouault-Pierre K, Krizsan S, Parsons A, Rajeeve V et al. ( 2022 ) . Integrative phosphoproteomics defines two biologically distinct groups of KMT2A rearranged acute myeloid leukaemia with different drug response phenotypes .

Barry S, Rai A, Haworth HO, Rajeeve V, Cutillas P, Korbonits M ( 2022 ) . Phosphoproteomics analysis of aryl hydrocarbon receptor interacting protein (AIP) knockout cells reveals AIP-mediated kinase signalling cascades . Endocrine Abstracts

( 2022 ) . Low HER2 enables dedifferentiation and transformation of normal breast epithelial cells via chromatin opening .

Puttock EH, Tyler EJ, Manni M, Maniati E, Butterworth C, Peerani E, Hirani P, Gauthier V et al. ( 2022 ) . Extracellular matrix educates a tumor macrophage phenotype found in ovarian cancer metastasis .

Williams JL, Paudyal A, Stewart M, Cutillas P, Tinker A, Metherell L ( 2022 ) . Abstract P2005: Loss Of Full-length Mylk3 Causes Dilated Cardiomyopathy Via A MYL2-independent Mechanism . Circulation Research vol. 131 , ( Suppl_1 )

De Los Angeles Colomina Basanta C, Bazzi M, Hijazi M, Bessant C, Cutillas PR ( 2022 ) . Community detection in empirical kinase networks identifies new members of signaling pathways .

Grey W, Rio-Machin A, Casado-Izquierdo P, Gronroos E, Ali S, Miettinen J, Bewicke-Copley F, Parsons A et al. ( 2022 ) . P405: INHIBITION OF CKS1-DEPENDENT PROTEOSTASIS REVEALS VULNERABILITIES IN LEUKAEMIC STEM CELLS WITH CONCOMITANT PROTECTION OF HEALTHY HAEMATOPOIETIC STEM CELLS . HemaSphere vol. 6 , 305 - 306 .

Grey W, Rio-Machin A, Casado P, Grönroos E, Ali S, Miettinen JJ, Bewicke-Copley F, Parsons A et al. ( 2022 ) . CKS1 inhibition depletes leukemic stem cells and protects healthy hematopoietic stem cells in acute myeloid leukemia . Science Translational Medicine vol. 14 , ( 650 ) Article eabn3248 ,

Woodward L, Jones TA, Patel A, Dokal AD, Stone TJ, Rajeeve V, Cutillas PR, Jones DTW et al. ( 2022 ) . LGG-44. Multi-omic analysis reveals integrated signalling networks in paediatric low-grade glioma . Neuro-Oncology vol. 24 , ( Supplement_1 ) i98 - i98 .

Thorup AS, Wilson J, Cutillas P, Dell'accio F ( 2022 ) . POS0229 ELUCIDATING THE MECHANISM OF ACTION DOWNSTREAM OF ROR2 BLOCKADE: A PHOSPHOPROTEOMIC APPROACH . Annals of the Rheumatic Diseases . vol. 81 , 351 - 351 .

Hijazi M, Casado P, Akhtar N, Alvarez-Teijeiro S, Rajeeve V, Cutillas PR ( 2022 ) . eEF2K Activity Determines Synergy to Cotreatment of Cancer Cells With PI3K and MEK Inhibitors . Molecular & Cellular Proteomics vol. 21 , ( 6 ) Article 100240 , 100240 - 100240 .

Thompson EM, Patel V, Rajeeve V, Cutillas PR, Stoker AW ( 2022 ) . The cytotoxic action of BCI is not dependent on its stated DUSP1 or DUSP6 targets in neuroblastoma cells . FEBS Open Bio vol. 12 , ( 7 ) 1388 - 1405 .

Pedicona F, Casado P, Hijazi M, Gribben JG, Rouault-Pierre K, Cutillas PR ( 2022 ) . Targeting the lysine-specific demethylase 1 rewires kinase networks and primes leukemia cells for kinase inhibitor treatment . Science Signaling vol. 15 , ( 730 ) Article eabl7989 ,

Thorup A-S, Wilson J, Strachan D, Caxaria S, Poulet B, Thomas B, Eldridge S, Nalesso G et al. ( 2022 ) . BLOCKING ROR2 IMPROVES CARTILAGE INTEGRITY AND PROVIDES PAIN RELIEF IN OSTEOARTHRITIS, IN PART BY MODULATING YAP SIGNALLING . Osteoarthritis and Cartilage vol. 30 , S159 - S159 .

Roy-Luzarraga M, Reynolds LE, de Luxán-Delgado B, Maiques O, Wisniewski L, Newport E, Rajeeve V, Drake RJG et al. ( 2022 ) . Suppression of Endothelial Cell FAK Expression Reduces Pancreatic Ductal Adenocarcinoma Metastasis after Gemcitabine Treatment . Cancer Research vol. 82 , ( 10 ) 1909 - 1925 .

Grey W, Rio-Machin A, Casado-Izquierdo P, Gronroos E, Ali S, Miettinen J, Copley FB, Parsons A et al. ( 2022 ) . 3094 – INHIBITION OF CKS1-DEPENDENT PROTEOSTASIS REVEALS VULNERABILITIES IN LEUKAEMIC STEM CELLS WITH CONCOMITANT PROTECTION OF HEALTHY HAEMATOPOIESIS . Experimental Hematology vol. 111 , S91 - S92 .

Murray ER, Menezes S, Henry JC, Williams JL, Alba-Castellón L, Baskaran P, Quétier I, Desai A et al. ( 2022 ) . Disruption of pancreatic stellate cell myofibroblast phenotype promotes pancreatic tumor invasion . Cell Reports vol. 38 , ( 4 ) Article 110227 , 110227 - 110227 .

Woodward L, Jones TA, Patel A, Dokal AD, Stone TJ, Rajeeve V, Cutillas PR, Jones DTW et al. ( 2022 ) . MULTI-OMIC ANALYSIS REVEALS INTEGRATED SIGNALLING NETWORKS IN PAEDIATRIC LOW-GRADE GLIOMA . NEURO-ONCOLOGY . vol. 24 , 98 - 98 .

Newport E, Pedrosa AR, Lees D, Dukinfield M, Carter E, Gomez‐Escudero J, Casado P, Rajeeve V et al. ( 2021 ) . Elucidating the role of the kinase activity of endothelial cell focal adhesion kinase in angiocrine signalling and tumour growth . The Journal of Pathology vol. 256 , ( 2 ) 235 - 247 .

Casado P, Hijazi M, Gerdes H, Cutillas PR ( 2021 ) . Implementation of Clinical Phosphoproteomics and Proteomics for Personalized Medicine . Methods in Molecular Biology , Springer US

Nobre LV, Basanta CC, Pedicona SF, Dokal AD, Arruda A, Smith R, Greenhalgh C, Patella F et al. ( 2021 ) . Abstract LBA013: Phosphoproteomics reveals active drug targets on pathways of resistance and predicts response to midostaurin plus chemotherapy in FLT3 mutant-positive acute myeloid leukemia . Molecular Cancer Therapeutics . vol. 20 , LBA013 - LBA013 .

Williams J, paudyal A, Stewart M, Cutillas P, Cox RD, Tinker A, Metherell L ( 2021 ) . Abstract 14037: A Shorter Myosin Light Chain Kinase 3 Isoform Maintains Myosin Light Chain 2 Phosphorylation but Does Not Attenuate the Dilated Cardiomyopathy Seen in C57BL/6N Mice . Circulation vol. 144 , ( Suppl_1 )

Davidson K, Grevitt P, Contreras-Gerenas MF, Bridge KS, Hermida M, Shah KM, Mardakheh FK, Stubbs M et al. ( 2021 ) . Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes . Cell Death & Disease vol. 12 , ( 11 ) Article 1075 ,

Veiga Nobre LMV, Pedicona SF, Dokal A, Arruda A, Smith R, Greenhalgh C, Patella F, Casado-Izquierdo P et al. ( 2021 ) . Proteomics and Phospho-Proteomics Reveal Predictive Signatures of Response and Mechanisms of Resistance to Midostaurin Plus Chemotherapy in FLT3 Mutant Positive Acute Myeloid Leukemia . Blood vol. 138 , ( Supplement 1 ) 3462 - 3462 .

Nollet M, Agrotis A, Michailidis F, Dokal AD, Rajeeve V, Burden J, Nightingale TD, Cutillas P et al. ( 2021 ) . Proximity interactome of LC3B in normal growth conditions .

Lecker LSM, Berlato C, Maniati E, Delaine-Smith R, Pearce OMT, Heath O, Nichols SJ, Trevisan C et al. ( 2021 ) . TGFBI Production by Macrophages Contributes to an Immunosuppressive Microenvironment in Ovarian Cancer . Cancer Research vol. 81 , ( 22 ) 5706 - 5719 .

Khorsandi SE, Dokal AD, Rajeeve V, Britton DJ, Illingworth MS, Heaton N, Cutillas PR ( 2021 ) . Computational Analysis of Cholangiocarcinoma Phosphoproteomes Identifies Patient-Specific Drug Targets . Cancer Research vol. 81 , ( 22 ) 5765 - 5776 .

Heydt Q, Xintaropoulou C, Clear A, Austin M, Pislariu I, Miraki-Moud F, Cutillas P, Korfi K et al. ( 2021 ) . Adipocytes disrupt the translational programme of acute lymphoblastic leukaemia to favour tumour survival and persistence . Nature Communications vol. 12 , ( 1 ) Article 5507 ,

Freire-Benéitez V, Pomella N, Millner TO, Dumas AA, Niklison-Chirou MV, Maniati E, Wang J, Rajeeve V et al. ( 2021 ) . Correction to ‘Elucidation of the BMI1 interactome identifies novel regulatory roles in glioblastoma’ . NAR Cancer vol. 3 , ( 2 ) Article zcab020 ,

Dokal AD, Arruda A, Smith R, Greenhalgh C, Patella F, Casado-Izquierdo PM, Wrench B, Theaker J et al. ( 2021 ) . Predictive phosphoproteomic signatures for midostaurin plus chemotherapy response in FLT3 mutant positive acute myeloid leukaemia . Journal of Clinical Oncology vol. 39 , ( 15_suppl ) 7019 - 7019 .

Gualtieri A, Kyprianou N, Gregory LC, Vignola ML, Nicholson JG, Tan R, Inoue S-I, Scagliotti V et al. ( 2021 ) . Activating mutations in BRAF disrupt the hypothalamo-pituitary axis leading to hypopituitarism in mice and humans . Nature Communications vol. 12 , ( 1 ) Article 2028 ,

Heward J, Koniali L, D’Avola A, Close K, Yeomans A, Philpott M, Dunford J, Rahim T et al. ( 2021 ) . KDM5 inhibition offers a novel therapeutic strategy for the treatment of <i>KMT2D</i> mutant lymphomas . Blood vol. 138 , ( 5 ) 370 - 381 .

Gerdes H, Casado P, Dokal A, Hijazi M, Akhtar N, Osuntola R, Rajeeve V, Fitzgibbon J et al. ( 2021 ) . Drug ranking using machine learning systematically predicts the efficacy of anti-cancer drugs . Nature Communications vol. 12 , ( 1 ) Article 1850 ,

Freire-Benéitez V, Pomella N, Millner TO, Dumas AA, Niklison-Chirou MV, Maniati E, Wang J, Rajeeve V et al. ( 2021 ) . Elucidation of the BMI1 interactome identifies novel regulatory roles in glioblastoma . NAR Cancer vol. 3 , ( 1 ) Article zcab009 ,

Martín-Guerrero SM, Alonso P, Iglesias A, Cimadevila M, Brea J, Loza MI, Casado P, Martín-Oliva D et al. ( 2021 ) . His452Tyr polymorphism in the human 5-HT2A receptor affects clozapine-induced signaling networks revealed by quantitative phosphoproteomics . Biochemical Pharmacology vol. 185 , Article 114440 , 114440 - 114440 .

Davidson K, Grevitt P, Contreras G. MF, Bridge KS, Hermida M, Shah KM, Mardakheh FK, Stubbs M et al. ( 2021 ) . Targeted therapy for<i>LIMD1</i>-deficient non-small cell lung cancer subtypes .

Edelmann J, Dokal AD, Vilventhraraja E, Holzmann K, Britton D, Klymenko T, Döhner H, Cragg M et al. ( 2021 ) . Rituximab and obinutuzumab differentially hijack the B cell receptor and NOTCH1 signaling pathways . iScience vol. 24 , ( 2 ) Article 102089 , 102089 - 102089 .

Bradley D, Viéitez C, Rajeeve V, Selkrig J, Cutillas PR, Beltrao P ( 2021 ) . Sequence and Structure-Based Analysis of Specificity Determinants in Eukaryotic Protein Kinases . Cell Reports vol. 34 , ( 2 ) Article 108602 , 108602 - 108602 .

Grey W, Rio-Machin A, Casado-Izquierdo P, Miettinen JJ, Copley F, Parsons A, Heckman CA, Cutillas P et al. ( 2020 ) . CKS1-dependent proteostatic regulation has dual roles combating acute myeloid leukemia whilst protecting normal hematopoiesis .

Patel A, Jones T, Woodward L, Dokal A, Rajeeve V, Cutillas P, Stone T, Jacques T et al. ( 2020 ) . LGG-57. SIGNALLING MECHANISMS IN PAEDIATRIC LOW-GRADE GLIOMA . Neuro-Oncology vol. 22 , ( Supplement_3 ) iii377 - iii377 .

Martín-Guerrero SM, Casado P, Hijazi M, Rajeeve V, Plaza-Díaz J, Abadía-Molina F, Navascués J, Cuadros MA et al. ( 2020 ) . PARP-1 activation after oxidative insult promotes energy stress-dependent phosphorylation of YAP1 and reduces cell viability . Biochemical Journal vol. 477 , ( 23 ) 4491 - 4513 .

Rio-Machin A, Casado-Izquierdo P, Miettinen J, Bewicke-Copley F, Khan N, Demeulemeester J, Krizsán S, Zheng J et al. ( 2020 ) . Integration of Deep Multi-Omics Profiling Veals New Insights into the Biology of Poor-Risk Acute Myeloid Leukemia . Blood vol. 136 , ( Supplement 1 ) 39 - 40 .

Fernández‐Varo G, Perramón M, Carvajal S, Oró D, Casals E, Boix L, Oller L, Macías‐Muñoz L et al. ( 2020 ) . Bespoken Nanoceria: An Effective Treatment in Experimental Hepatocellular Carcinoma . Hepatology vol. 72 , ( 4 ) 1267 - 1282 .

Akhtar N, Baig MW, Haq I-U, Rajeeve V, Cutillas PR ( 2020 ) . Withanolide Metabolites Inhibit PI3K/AKT and MAPK Pro-Survival Pathways and Induce Apoptosis in Acute Myeloid Leukemia Cells . Biomedicines vol. 8 , ( 9 ) 333 - 333 .

Gadaleta E, Fourgoux P, Pirró S, Thorn GJ, Nelan R, Ironside A, Rajeeve V, Cutillas PR et al. ( 2020 ) . Characterization of four subtypes in morphologically normal tissue excised proximal and distal to breast cancer . npj Breast Cancer vol. 6 , ( 1 ) Article 38 ,

Gadaleta E, Fourgoux P, Pirró S, Thorn GJ, Nelan R, Ironside A, Rajeeve V, Cutillas PR et al. ( 2020 ) . Characterization of four subtypes in morphologically normal tissue excised proximal and distal to breast cancer . NPJ breast cancer vol. 6 , ( 1 )

Xu R, Jones W, Wilcz‐Villega E, Costa ASH, Rajeeve V, Bentham RB, Bryson K, Nagano A et al. ( 2020 ) . The breast cancer oncogene IKKε coordinates mitochondrial function and serine metabolism . EMBO reports vol. 21 , ( 9 ) Article e48260 ,

( 2020 ) . Transition to naïve human pluripotency mirrors pan-cancer DNA hypermethylation . Nature Communications vol. 11 , ( 1 ) Article 3671 ,

Wong P-P, Muñoz-Félix JM, Hijazi M, Kim H, Robinson SD, De Luxán-Delgado B, Rodríguez-Hernández I, Maiques O et al. ( 2020 ) . Cancer Burden Is Controlled by Mural Cell-β3-Integrin Regulated Crosstalk with Tumor Cells . Cell vol. 181 , ( 6 ) 1346 - 1363.e21 .

Kostaras E, Kaserer T, Lazaro G, Heuss SF, Hussain A, Casado P, Hayes A, Yandim C et al. ( 2020 ) . A systematic molecular and pharmacologic evaluation of AKT inhibitors reveals new insight into their biological activity . British Journal of Cancer vol. 123 , ( 4 ) 542 - 555 .

Invergo BM, Petursson B, Akhtar N, Bradley D, Giudice G, Hijazi M, Cutillas P, Petsalaki E et al. ( 2020 ) . Prediction of Signed Protein Kinase Regulatory Circuits . Cell Systems vol. 10 , ( 5 ) 384 - 396.e9 .

Demircioglu F, Wang J, Candido J, Costa ASH, Casado P, de Luxan Delgado B, Reynolds LE, Gomez-Escudero J et al. ( 2020 ) . Cancer associated fibroblast FAK regulates malignant cell metabolism . Nature Communications vol. 11 , ( 1 ) Article 1290 ,

Huang K-W, Reebye V, Czysz K, Ciriello S, Dorman S, Reccia I, Lai H-S, Peng L et al. ( 2020 ) . Liver Activation of Hepatocellular Nuclear Factor-4α by Small Activating RNA Rescues Dyslipidemia and Improves Metabolic Profile . Molecular Therapy - Nucleic Acids vol. 19 , 361 - 370 .

Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR ( 2020 ) . Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring . Nature Biotechnology vol. 38 , ( 4 ) 493 - 502 .

Kostelnik KB, Barker A, Schultz C, Mitchell TP, Rajeeve V, White IJ, Aurrand-Lions M, Nourshargh S et al. ( 2019 ) . Dynamic trafficking and turnover of JAM-C is essential for endothelial cell migration . PLOS Biology vol. 17 , ( 12 ) e3000554 - e3000554 .

Cutillas PR, Hijazi M, Smith R, Bessant C, Britton D ( 2019 ) . Abstract C088: Chemical phosphoproteomics systematically identifies circuitries of kinase networks in cancer cells and predicts their response to kinase inhibitors . Molecular Cancer Therapeutics . vol. 18 , C088 - C088 .

Carvajal S, Perramón M, Casals G, Oró D, Ribera J, Morales-Ruiz M, Casals E, Casado P et al. ( 2019 ) . Cerium Oxide Nanoparticles Protect against Oxidant Injury and Interfere with Oxidative Mediated Kinase Signaling in Human-Derived Hepatocytes . International Journal of Molecular Sciences vol. 20 , ( 23 ) 5959 - 5959 .

Xu R, Jones W, Wilcz-Villega E, Costa ASH, Rajeeve V, Bentham RB, Bryson K, Nagano A et al. ( 2019 ) . The breast cancer oncogene IKKε coordinates mitochondrial function and serine metabolism .

Grey W, Casado-Izquierdo P, Cutillas P, Bonnet D ( 2019 ) . Combination Therapy Targeting CKS1-Dependent Protein Degradation Reduces AML Burden Whilst Protecting Normal Haematopoietic Stem Cellsfrom Cytarabine Toxicity . Blood vol. 134 , ( Supplement_1 ) 2535 - 2535 .

Edelmann J, Dokal A, Holzmann K, Britton DJ, Vilventhraraja E, Smith RJ, Cragg MS, Braun A et al. ( 2019 ) . Rituximab and Obinutuzumab Induce Direct B-Cell Death Via B-Cell Receptor (BCR) Signaling, but Rituximab Elicits Stronger BCR-Derived Pro-Survival Signals Diminishing Apoptosis . Blood vol. 134 , ( Supplement_1 ) 1579 - 1579 .

Martín-Guerrero SM, Casado P, Muñoz-Gámez JA, Carrasco M-C, Navascués J, Cuadros MA, López-Giménez JF, Cutillas PR et al. ( 2019 ) . Poly(ADP-Ribose) Polymerase-1 inhibition potentiates cell death and phosphorylation of DNA damage response proteins in oxidative stressed retinal cells . Experimental Eye Research vol. 188 , Article 107790 , 107790 - 107790 .

Roelens B, Barroso C, Montoya A, Cutillas P, Zhang W, Woglar A, Girard C, Martinez-Perez E et al. ( 2019 ) . Spatial Regulation of Polo-Like Kinase Activity During <i>Caenorhabditis elegans</i> Meiosis by the Nucleoplasmic HAL-2/HAL-3 Complex . Genetics vol. 213 , ( 1 ) 79 - 96 .

Kostelnik KB, Barker A, Schultz C, Rajeeve V, White IJ, Aurrand-Lions M, Nourshargh S, Cutillas P et al. ( 2019 ) . Dynamic trafficking and turnover of Jam-C is essential for endothelial cell migration .

Alrawashdeh W, Jones R, Dumartin L, Radon TP, Cutillas PR, Feakins RM, Dmitrovic B, Demir IE et al. ( 2019 ) . Perineural invasion in pancreatic cancer: proteomic analysis and <i>in vitro</i> modelling . Molecular Oncology vol. 13 , ( 5 ) 1075 - 1091 .

Santo-Domingo J, Galindo AN, Cominetti O, De Marchi U, Cutillas P, Dayon L, Wiederkehr A ( 2019 ) . Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells . Cell Communication and Signaling vol. 17 , ( 1 ) Article 14 ,

Thomas JR, Moore KM, Sproat C, Mo S, Wolanska KI, Maldonado H, Haider S, Newman D et al. ( 2019 ) . Integrin αVβ6-EGFR crosstalk regulates bidirectional force transmission and controls breast cancer invasion . INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY . vol. 100 , A39 - A39 .

Edelmann J, Britton DJ, Vilventhraraja E, Dokal A, Holzmann K, Cragg MC, Braun A, Cutillas P et al. ( 2018 ) . Anti-CD20 Monoclonal Antibodies Hijack the B-Cell Receptor Signaling Cascade Thereby Activating the NOTCH1 Signaling Pathway . Blood . vol. 132 , 588 - 588 .

Angulo-Urarte A, Casado P, Castillo SD, Kobialka P, Kotini MP, Figueiredo AM, Castel P, Rajeeve V et al. ( 2018 ) . Endothelial cell rearrangements during vascular patterning require PI3-kinase-mediated inhibition of actomyosin contractility . Nature Communications vol. 9 , ( 1 ) Article 4826 ,

Arnandis T, Monteiro P, Adams SD, Bridgeman VL, Rajeeve V, Gadaleta E, Marzec J, Chelala C et al. ( 2018 ) . Oxidative Stress in Cells with Extra Centrosomes Drives Non-Cell-Autonomous Invasion . Developmental Cell vol. 47 , ( 4 ) 409 - 424.e9 .

Álvarez-Teijeiro S, García-Inclán C, Villaronga MÁ, Casado P, Hermida-Prado F, Granda-Díaz R, Rodrigo JP, Calvo F et al. ( 2018 ) . Factors Secreted by Cancer-Associated Fibroblasts that Sustain Cancer Stem Properties in Head and Neck Squamous Carcinoma Cells as Potential Therapeutic Targets . Cancers vol. 10 , ( 9 ) 334 - 334 .

Thomas JR, Moore KM, Sproat C, Maldonado-Lorca HJ, Mo S, Haider S, Hammond D, Thomas GJ et al. ( 2018 ) . Integrin αVβ6-EGFR crosstalk regulates bidirectional force transmission and controls breast cancer invasion .

Simon T, Pinioti S, Schellenberger P, Rajeeve V, Wendler F, Cutillas PR, King A, Stebbing J et al. ( 2018 ) . Shedding of bevacizumab in tumour cells-derived extracellular vesicles as a new therapeutic escape mechanism in glioblastoma . Molecular Cancer vol. 17 , ( 1 ) Article 132 ,

Ferrandiz N, Barroso C, Telecan O, Shao N, Kim H-M, Testori S, Faull P, Cutillas P et al. ( 2018 ) . Author Correction: Spatiotemporal regulation of Aurora B recruitment ensures release of cohesion during C. elegans oocyte meiosis . Nature Communications vol. 9 , ( 1 ) Article 3558 ,

Tummala H, Dokal AD, Walne A, Ellison A, Cardoso S, Amirthasigamanipillai S, Kirwan M, Browne I et al. ( 2018 ) . Genome instability is a consequence of transcription deficiency in patients with bone marrow failure harboring biallelic\n <i>ERCC6L2</i>\n variants . Proceedings of the National Academy of Sciences vol. 115 , ( 30 ) 7777 - 7782 .

Casado P, Wilkes EH, Miraki-Moud F, Hadi MM, Rio-Machin A, Rajeeve V, Pike R, Iqbal S et al. ( 2018 ) . Proteomic and genomic integration identifies kinase and differentiation determinants of kinase inhibitor sensitivity in leukemia cells . Leukemia vol. 32 , ( 8 ) 1818 - 1822 .

Corominas MP, Restoy SC, Casals G, Oró D, Ribera J, Casals E, Casado-Izquierdo P, Varo GF et al. ( 2018 ) . Cerium oxide nanoparticles protect against oxidant mediated injury and recover kinase activity of multiple pathways in human-derived hepatocellular carcinoma cells . Journal of Hepatology . vol. 68 , S136 - S136 .

Reebye V, Huang K-W, Lin V, Jarvis S, Cutilas P, Dorman S, Ciriello S, Andrikakou P et al. ( 2018 ) . Gene activation of CEBPA using saRNA: preclinical studies of the first in human saRNA drug candidate for liver cancer . Oncogene vol. 37 , ( 24 ) 3216 - 3228 .

Pearce OMT, Delaine-Smith RM, Maniati E, Nichols S, Wang J, Böhm S, Rajeeve V, Ullah D et al. ( 2018 ) . Deconstruction of a Metastatic Tumor Microenvironment Reveals a Common Matrix Response in Human Cancers . Cancer Discovery vol. 8 , ( 3 ) 304 - 319 .

Ferrandiz N, Barroso C, Telecan O, Shao N, Kim H-M, Testori S, Faull P, Cutillas P et al. ( 2018 ) . Spatiotemporal regulation of Aurora B recruitment ensures release of cohesion during C. elegans oocyte meiosis . Nature Communications vol. 9 , ( 1 ) Article 834 ,

Fearon AE, Carter EP, Clayton NS, Wilkes EH, Baker A-M, Kapitonova E, Bakhouche BA, Tanner Y et al. ( 2018 ) . PHLDA1 Mediates Drug Resistance in Receptor Tyrosine Kinase-Driven Cancer . Cell Reports vol. 22 , ( 9 ) 2469 - 2481 .

Wirbel J, Cutillas P, Saez-Rodriguez J ( 2018 ) . Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells . Methods in Molecular Biology , Springer New York

Casado P, Wilkes EH, Miraki-Moud F, Hadi MM, Rio-Machin A, Rajeeve V, Pike R, Iqbal S et al. ( 2017 ) . Proteomic and genomic integration identifies kinase and differentiation determinants of kinase inhibitor sensitivity in leukemia cells . Leukemia

Kyprianou N, Gregory L, Vignola ML, Marinelli E, Gualtieri A, Scagliotti V, Davis S, Casado P et al. ( 2017 ) . The MAPK effector B-Raf is essential for hypothalamic-pituitary axis development and activating mutations in BRAF Cause Congenital hypopituitarism . Endocrine Abstracts

Bradley D, Viéitez C, Rajeeve V, Cutillas PR, Beltrao P ( 2017 ) . Global analysis of specificity determinants in eukaryotic protein kinases .

Wilkes EH, Casado P, Rajeeve V, Cutillas PR ( 2017 ) . Kinase activity ranking using phosphoproteomics data (KARP) quantifies the contribution of protein kinases to the regulation of cell viability . Molecular &amp; Cellular Proteomics vol. 16 , ( 9 ) 1694 - 1704 .

Dermit M, Dokal A, Cutillas PR ( 2017 ) . Approaches to identify kinase dependencies in cancer signalling networks . FEBS Letters vol. 591 , ( 17 ) 2577 - 2592 .

Wilkes E, Cutillas PR ( 2017 ) . Label-Free Phosphoproteomic Approach for Kinase Signaling Analysis . 199 - 217 .

Naba A, Pearce OMT, Del Rosario A, Ma D, Ding H, Rajeeve V, Cutillas PR, Balkwill FR et al. ( 2017 ) . Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics . Journal of Proteome Research vol. 16 , ( 8 ) 3083 - 3091 .

Yuzugulen J, Douthwaite JA, Wood EG, Villar IC, Patel NSA, Jegard J, Gaertner H, Rossitto-Borlat I et al. ( 2017 ) . Characterisation of preproendothelin-1 derived peptides identifies Endothelin-Like Domain Peptide as a modulator of Endothelin-1 . Scientific Reports vol. 7 , ( 1 ) Article 4956 ,

Montfort A, Pearce O, Maniati E, Vincent BG, Bixby L, Böhm S, Dowe T, Wilkes EH et al. ( 2017 ) . A Strong B-cell Response Is Part of the Immune Landscape in Human High-Grade Serous Ovarian Metastases . Clinical Cancer Research vol. 23 , ( 1 ) 250 - 262 .

Fernandez-Varo G, Oró D, Yudina T, Carvajal S, Marfà S, Boix L, Perramón M, Oller L et al. ( 2017 ) . Cerium oxide nanoparticles display anti-tumoral activity and improve survival in experimental hepatocellular carcinoma . Journal of Hepatology . vol. 66 , S229 - S230 .

Casado-Izquierdo P, Wilkes EH, Miraki-Moud F, Hadi MM, Rio-Machin A, Rajeeve V, Pike R, Sameena I et al. ( 2017 ) . PHOSPHOPROTEOMICS AND MASS CYTOMETRY SIGNATURES OF PRIMARY AML CELL DIFFERENTIATION ARE ASSOCIATED WITH SENSITIVITY TO KINASE INHIBITORS . HAEMATOLOGICA . vol. 102 , 203 - 203 .

Cutillas PR ( 2017 ) . Systems Biology of Oncogenic Signaling . MOLECULAR & CELLULAR PROTEOMICS . vol. 16 , S15 - S15 .

Cutillas PR ( 2017 ) . Targeted In-Depth Quantification of Signaling Using Label-Free Mass Spectrometry . 245 - 268 .

Graupera M, Angulo-Urarte A, Kobialka P, Castel P, Casado PM, Affolter M, Gerhardt H, Belting H-G et al. ( 2017 ) . The p110alpha/PI3K controls endothelial cell rearrangements during angiogenesis by stimulating MLC2 dephosphorylation . JOURNAL OF VASCULAR RESEARCH . vol. 54 , 73 - 73 .

Casado P, Hijazi M, Britton D, Cutillas PR ( 2016 ) . Impact of phosphoproteomics in the translation of kinase‐targeted therapies . PROTEOMICS vol. 17 , ( 6 ) Article 1600235 ,

Dermit M, Casado P, Rajeeve V, Wilkes EH, Foxler DE, Campbell H, Critchlow S, Sharp TV et al. ( 2016 ) . Oxidative stress downstream of mTORC1 but not AKT causes a proliferative defect in cancer cells resistant to PI3K inhibition . Oncogene vol. 36 , ( 19 ) 2762 - 2774 .

Casado P, Wilkes E, Hadi MM, Rajeeve V, Miraki-Moud F, Pike R, Del Rio-Machin A, Iqbal S et al. ( 2016 ) . Differentiation Status Revealed By Shotgun Phosphoproteomics Determines Sensitivity of Primary AML Cells to Kinase Inhibitors . Blood . vol. 128 , 840 - 840 .

Britton DJ, Wilkes E, Casado P, Rajeeve V, Fitzgibbon J, Gribben J, Cutillas PR ( 2016 ) . Proteomic Analysis Directs Effective Drug Selection in Relapsed AML By Quantifying Drug Targets . Blood . vol. 128 , 5265 - 5265 .

Afzal TA, Luong LA, Chen D, Zhang C, Yang F, Chen Q, An W, Wilkes E et al. ( 2016 ) . NCK Associated Protein 1 Modulated by miRNA‐214 Determines Vascular Smooth Muscle Cell Migration, Proliferation, and Neointima Hyperplasia . Journal of the American Heart Association vol. 5 , ( 12 ) Article e004629 ,

Villoria MT, Ramos F, Dueñas E, Faull P, Cutillas PR, Clemente‐Blanco A ( 2016 ) . Stabilization of the metaphase spindle by Cdc14 is required for recombinational\n <scp>DNA</scp>\n repair . The EMBO Journal vol. 36 , ( 1 ) 79 - 101 .

Prysyazhna O, Scotcher J, Boguslavskyi A, Kistamas K, Hadgraft N, Martin ED, Worthington J, Rudyk O et al. ( 2016 ) . Redox Control of Protein Kinase G Iα Fine-Tunes the Frank-Starling Law of the Heart in Vivo by Regulating Diastolic Relaxation . Free Radical Biology and Medicine . vol. 100 , S148 - S148 .

Scotcher J, Prysyazhna O, Boguslavskyi A, Kistamas K, Hadgraft N, Martin ED, Worthington J, Rudyk O et al. ( 2016 ) . Disulfide-activated protein kinase G Iα regulates cardiac diastolic relaxation and fine-tunes the Frank–Starling response . Nature Communications vol. 7 , ( 1 ) Article 13187 ,

Sciacovelli M, Gonçalves E, Johnson TI, Zecchini VR, da Costa ASH, Gaude E, Drubbel AV, Theobald SJ et al. ( 2016 ) . Fumarate is an epigenetic modifier that elicits epithelial-to-mesenchymal transition . Nature vol. 537 , ( 7621 ) 544 - 547 .

Wirbel J, Cutillas P, Saez-Rodriguez J ( 2016 ) . Phosphoproteomics-based Profiling of Kinase Activities in Cancer Cells .

Bouchekioua-Bouzaghou K, Lenihan C, Shia A, Wilkes E, Casado-Izquierdo P, Cutillas P, Schmid P ( 2016 ) . Abstract 2819: Characterization of the mechanisms of early and later stages of resistance to the selective CDK4/6 inhibitor palbociclib . Cancer Research . vol. 76 , 2819 - 2819 .

Nadarajan S, Mohideen F, Tzur YB, Ferrandiz N, Crawley O, Montoya A, Faull P, Snijders AP et al. ( 2016 ) . The MAP kinase pathway coordinates crossover designation with disassembly of synaptonemal complex proteins during meiosis . eLife vol. 5 , Article e12039 ,

Lenihan C, Bouchekioua-Bouzaghou K, Shia A, Wilkes E, Casado-Izquierdo1 P, Cutillas P, Schmid P ( 2016 ) . Abstract P3-06-02: Characterization of resistance to the selective CDK4/6 inhibitor palbociclib in ER positive breast cancer . Cancer Research . vol. 76 ,

Kulbe H, Iorio F, Chakravarty P, Milagre CS, Moore R, Thompson RG, Everitt G, Canosa M et al. ( 2016 ) . Integrated transcriptomic and proteomic analysis identifies protein kinase CK2 as a key signaling node in an inflammatory cytokine network in ovarian cancer cells . Oncotarget vol. 7 , ( 13 ) 15648 - 15661 .

Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM et al. ( 2016 ) . Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) . Autophagy vol. 12 , ( 1 ) 1 - 222 .

Cutillas PR, Crnogorac-Jurcevic T ( 2016 ) . Application of Proteomics in Cancer Biomarker Discovery: GeLC-MS/MS . 201 - 209 .

Quétier I, Marshall JJT, Spencer-Dene B, Lachmann S, Casamassima A, Franco C, Escuin S, Worrall JT et al. ( 2016 ) . Knockout of the PKN Family of Rho Effector Kinases Reveals a Non-redundant Role for PKN2 in Developmental Mesoderm Expansion . Cell Reports vol. 14 , ( 3 ) 440 - 448 .

Arnandis T, Rajeeve V, Brennan CH, Cutillas PR, Godinho SA ( 2016 ) . Paracrine-mediated invasion induced by centrosome amplification . MOLECULAR BIOLOGY OF THE CELL . vol. 27 ,

Tomlinson JAP, Caplin B, Boruc O, Bruce-Cobbold C, Cutillas P, Dormann D, Faull P, Grossman RC et al. ( 2015 ) . Reduced Renal Methylarginine Metabolism Protects against Progressive Kidney Damage . Journal of the American Society of Nephrology vol. 26 , ( 12 ) 3045 - 3059 .

Terfve CDA, Wilkes EH, Casado P, Cutillas PR, Saez-Rodriguez J ( 2015 ) . Large-scale models of signal propagation in human cells derived from discovery phosphoproteomic data . Nature Communications vol. 6 , ( 1 ) Article 8033 ,

Carretero L, Llavona P, López-Hernández A, Casado P, Cutillas PR, de la Peña P, Barros F, Domínguez P ( 2015 ) . ERK and RSK are necessary for TRH-induced inhibition of r-ERG potassium currents in rat pituitary GH 3 cells . Cellular Signalling vol. 27 , ( 9 ) 1720 - 1730 .

Herranz N, Gallage S, Mellone M, Wuestefeld T, Klotz S, Hanley CJ, Raguz S, Acosta JC et al. ( 2015 ) . mTOR regulates MAPKAPK2 translation to control the senescence-associated secretory phenotype . Nature Cell Biology vol. 17 , ( 9 ) 1205 - 1217 .

Wilkes EH, Terfve C, Gribben JG, Saez-Rodriguez J, Cutillas PR ( 2015 ) . Empirical inference of circuitry and plasticity in a kinase signaling network . Proceedings of the National Academy of Sciences vol. 112 , ( 25 ) 7719 - 7724 .

Rotival M, Ko J-H, Srivastava PK, Kerloc'h A, Montoya A, Mauro C, Faull P, Cutillas PR et al. ( 2015 ) . Integrating Phosphoproteome and Transcriptome Reveals New Determinants of Macrophage Multinucleation . Molecular &amp; Cellular Proteomics vol. 14 , ( 3 ) 484 - 498 .

Hall AM, Vilasi A, Garcia-Perez I, Lapsley M, Alston CL, Pitceathly RDS, McFarland R, Schaefer AM et al. ( 2015 ) . The urinary proteome and metabonome differ from normal in adults with mitochondrial disease . Kidney International vol. 87 , ( 3 ) 610 - 622 .

Cutillas PR ( 2015 ) . Role of phosphoproteomics in the development of personalized cancer therapies . PROTEOMICS – Clinical Applications vol. 9 , ( 3-4 ) 383 - 395 .

Wilkes EH, Casado P, Cutillas PR ( 2014 ) . Approaches for measuring signalling plasticity in the context of resistance to targeted cancer therapies . Biochemical Society Transactions vol. 42 , ( 4 ) 791 - 797 .

Rajeeve V, Vendrell I, Wilkes E, Torbett N, Cutillas PR ( 2014 ) . Cross-species Proteomics Reveals Specific Modulation of Signaling in Cancer and Stromal Cells by Phosphoinositide 3-kinase (PI3K) Inhibitors . Molecular &amp; Cellular Proteomics vol. 13 , ( 6 ) 1457 - 1470 .

Casado P, Bilanges B, Rajeeve V, Vanhaesebroeck B, Cutillas PR ( 2014 ) . Environmental Stress Affects the Activity of Metabolic and Growth Factor Signaling Networks and Induces Autophagy Markers in MCF7 Breast Cancer Cells . Molecular &amp; Cellular Proteomics vol. 13 , ( 3 ) 836 - 848 .

Yuzugulen J, Wood EG, Villar IC, Douthwaite JA, Patel NSAINS, Jegard J, Montoya A, Cutillas P et al. ( 2013 ) . Characterisation of the “Endothelin-Like Domain Peptide” (ELDP) co-synthesised with Endothelin-1 from the EDN1 gene . Life Sciences vol. 93 , ( 25-26 ) e2 - e2 .

Cutillas PR ( 2013 ) . The role of proteomics in the development of personalised cancer medicine . European Pharmaceutical Review vol. 18 , ( 2 ) 47 - 50 .

Lumb S, Torbett N, Vendrell I, Turner H, Page M, Hales P, Maloney A, Vanhaesebroeck B et al. ( 2013 ) . THU0045 Epratuzumab, an Antibody Targeting CD22 on B Cells, Induces Phosphoprotein Changes Following B-Cell Receptor Activation in Vitro . Annals of the Rheumatic Diseases vol. 72 , A179 - A179 .

Casado P, Alcolea MP, Iorio F, Rodríguez-Prados J-C, Vanhaesebroeck B, Saez-Rodriguez J, Joel S, Cutillas PR ( 2013 ) . Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors . Genome Biology vol. 14 , ( 4 ) Article R37 ,

Fearon AE, Cutillas PR, Grose RP ( 2013 ) . Abstract 4266: Investigating the functional effects of oncogenic FGFR2 mutations in endometrial cancer . Cancer Research vol. 73 , ( 8_Supplement ) 4266 - 4266 .

Casado P, Rodriguez-Prados J-C, Cosulich SC, Guichard S, Vanhaesebroeck B, Joel S, Cutillas PR ( 2013 ) . Kinase-Substrate Enrichment Analysis Provides Insights into the Heterogeneity of Signaling Pathway Activation in Leukemia Cells . Science Signaling vol. 6 , ( 268 )

Alrawashdeh W, Jones R, Cutillas P, Wijesuriya N, Crnogorac-Jurcevic T ( 2013 ) . Proteomic analysis of perineural invasion in pancreatic adenocarcinoma reveals up-regulation of neurosecretory protein VGF in invaded nerves . Pancreatology vol. 13 , ( 2 ) e3 - e3 .

Rajeeve V, Pearce W, Cascante M, Vanhaesebroeck B, Cutillas PR ( 2013 ) . Polyamine production is downstream and upstream of oncogenic PI3K signalling and contributes to tumour cell growth . Biochemical Journal vol. 450 , ( 3 ) 619 - 628 .

Beltran L, Casado P, Rodríguez-Prados J-C, Cutillas PR ( 2012 ) . Global profiling of protein kinase activities in cancer cells by mass spectrometry . Journal of Proteomics vol. 77 , 492 - 503 .

Yuzugulen J, Wood EG, Douthwaite JA, Villar IC, Patel NS, Jegard J, Montoya A, Cutillas P et al. ( 2012 ) . Abstract 18898: Characterization of Proendothelin-1 Derived Peptides Identifies a Co-secreted Modulator of ET-1 Vasoconstriction, and Provides Insights for Biomarker Measurements . Circulation vol. 126 , ( suppl_21 )

Butler T, Montoya A, Clear AJ, Coutinho R, Taussig DC, Cutillas P, Gribben JG ( 2012 ) . Anergic Response to B-Cell Receptor Signaling in Chronic Lymphocytic Leukemia: The Differing Roles of IgD and IgM in the Microenvironment and Peripheral Blood . Blood . vol. 120 , 2889 - 2889 .

Alcolea MP, Casado P, Rodríguez-Prados J-C, Vanhaesebroeck B, Cutillas PR ( 2012 ) . Phosphoproteomic Analysis of Leukemia Cells under Basal and Drug-treated Conditions Identifies Markers of Kinase Pathway Activation and Mechanisms of Resistance . Molecular &amp; Cellular Proteomics vol. 11 , ( 8 ) 453 - 466 .

Beltran L, Cutillas PR ( 2012 ) . Advances in phosphopeptide enrichment techniques for phosphoproteomics . Amino Acids vol. 43 , ( 3 ) 1009 - 1024 .

Cappadona S, Baker PR, Cutillas PR, Heck AJR, van Breukelen B ( 2012 ) . Current challenges in software solutions for mass spectrometry-based quantitative proteomics . Amino Acids vol. 43 , ( 3 ) 1087 - 1108 .

( 2012 ) . Abstract 1792: The potential role of targeting HER1-4 in bladder cancer . Cancer Research vol. 72 , ( 8_Supplement ) 1792 - 1792 .

Kulbe H, Chakravarty P, Moore R, Iorio F, Montoya A, Saez-Rodriguez J, Cutillas P, Balkwill F ( 2012 ) . Abstract 49: Targeting the TNF network in human ovarian cancer - A systems biology approach . Cancer Research vol. 72 , ( 8_Supplement ) 49 - 49 .

Burling KA, Cutillas PR, Church D, Lapsley M, Norden AGW ( 2012 ) . Analysis of molecular forms of urine Retinol-Binding Protein in Fanconi Syndrome and design of an accurate immunoassay . Clinica Chimica Acta vol. 413 , ( 3-4 ) 483 - 489 .

Worthington J, Cutillas PR, Timms JF ( 2011 ) . IMAC/TiO₂ enrich for peptide modifications other than phosphorylation: Implications for chromatographic choice and database searching in phosphoproteomics . PROTEOMICS vol. 11 , ( 23 ) 4583 - 4587 .

Beltran L, Chaussade C, Vanhaesebroeck B, Cutillas PR ( 2011 ) . Calpain interacts with class IA phosphoinositide 3-kinases regulating their stability and signaling activity . P NATL ACAD SCI USA vol. 108 , ( 39 ) 16217 - 16222 .

Montoya A, Beltran L, Casado P, Rodriguez-Prados JC, Cutillas PR ( 2011 ) . Characterization of a TiO2 enrichment method for label-free quantitative phosphoproteomics . METHODS vol. 54 , ( 4 ) 370 - 378 .

Cutillas PR, Jorgensen C ( 2011 ) . Biological signalling activity measurements using mass spectrometry . BIOCHEM J vol. 434 , 189 - 199 .

Casado P, Cutillas PR ( 2011 ) . A Self-validating Quantitative Mass Spectrometry Method for Assessing the Accuracy of High-content Phosphoproteomic Experiments . MOL CELL PROTEOMICS vol. 10 , ( 1 )

Cutillas PR ( 2010 ) . Analysis of Peptides in Biological Fluids by LC-MS/MS . 311 - 321 .

Cutillas PR, Timms JF ( 2010 ) . Approaches and Applications of Quantitative LC-MS for Proteomics and Activitomics . 3 - 17 .

Alcolea MP, Cutillas PR ( 2010 ) . In-Depth Analysis of Protein Phosphorylation by Multidimensional Ion Exchange Chromatography and Mass Spectrometry . 111 - 126 .

Timms JF, Cutillas PR ( 2010 ) . Overview of Quantitative LC-MS Techniques for Proteomics and Activitomics . Methods in Molecular Biology , Humana Press

Alcolea MP, Cutillas PR ( 2010 ) . Quantification of Protein Kinase Activities by LC-MS . 325 - 337 .

Jueliger S, Maharaj L, Iyengar S, Ghazaly E, Cutillas P, Auer R, Rommel C, Li L et al. ( 2010 ) . Abstract 4489: The activity of novel, potent, selective PI3K/mTOR pathway inhibitors in B-cell malignancies . Cancer Research . vol. 70 , 4489 - 4489 .

Alcolea MP, Kleiner O, Cutillas PR ( 2009 ) . Increased Confidence in Large-Scale Phosphoproteomics Data by Complementary Mass Spectrometric Techniques and Matching of Phosphopeptide Data Sets . J PROTEOME RES vol. 8 , ( 8 ) 3808 - 3815 .

Quintana LF, Campistol JM, Alcolea MP, Bañon-Maneus E, Sol-González A, Cutillas PR ( 2009 ) . Application of Label-free Quantitative Peptidomics for the Identification of Urinary Biomarkers of Kidney Chronic Allograft Dysfunction . Molecular &amp; Cellular Proteomics vol. 8 , ( 7 ) 1658 - 1673 .

Cutillas PR ( 2009 ) . Quantifying oncogenic signalling by mass spectrometry . AMINO ACIDS vol. 37 , ( 4 ) 762 - 762 .

Vilasi A, Cutillas PR, Unwin RJ ( 2008 ) . Application of proteomic techniques to the study of urine and renal tissue . PROTEOMICS – Clinical Applications vol. 2 , ( 12 ) 1564 - 1574 .

Capasso G, Debnam ES, Cutillas PR, Brunskill NJ, Unwin RJ ( 2008 ) . Classical and Novel Hormonal Influences on Renal Tubular Transport, and the Emerging Concept of Intracrine Regulation . Seldin and Giebisch S the Kidney ,

Graupera M, Guillermet-Guibert J, Foukas LC, Phng L-K, Cain RJ, Salpekar A, Pearce W, Meek S et al. ( 2008 ) . Angiogenesis selectively requires the p110α isoform of PI3K to control endothelial cell migration . Nature vol. 453 , ( 7195 ) 662 - 666 .

Capasso G, Debnam ES, Cutillas PR, Brunski NJ, Unwin RJ ( 2008 ) . CHAPTER 35 Classical and Novel Hormonal Influences on Renal Tubular Transport, and the Emerging Concept of Intracrine Regulation . Seldin and Giebisch's The Kidney , Elsevier

Capasso G, Debnam ES, Cutillas PR, Brunski NJ, Unwin RJ ( 2008 ) . Classical and Novel Hormonal Influences on Renal Tubular Transport, and the Emerging Concept of Intracrine Regulation . Seldin and Giebisch's The Kidney , Elsevier

Cutillas PR, Vanhaesebroeck B ( 2007 ) . Quantitative profile of five murine core proteomes using label-free functional proteomics . MOL CELL PROTEOMICS vol. 6 , ( 9 ) 1560 - 1573 .

Vilasi A, Cutillas PR, Maher AD, Zirah SFM, Capasso G, Norden AWG, Holmes E, Nicholson JK et al. ( 2007 ) . Combined proteomic and metabonomic studies in three genetic forms of the renal Fanconi syndrome . AM J PHYSIOL-RENAL vol. 293 , ( 2 ) F456 - F467 .

Cutillas PR ( 2007 ) . Quantification of Polypeptides by Mass Spectrometry . Wiley

Geering B, Cutillas PR, Nock G, Gharbi SI, Vanhaesebroeck B ( 2007 ) . Class IA phosphoinositide 3-kinases are obligate p85-p110 heterodimers . P NATL ACAD SCI USA vol. 104 , ( 19 ) 7809 - 7814 .

( 2007 ) . Correction . Clinical Chemistry vol. 53 , ( 4 ) 805 - 805 .

Geering B, Cutillas PR, Vanhaesebroeck B ( 2007 ) . Regulation of class IA PI3Ks: is there a role for monomeric PI3K subunits? . Biochemical Society Transactions . vol. 35 , 199 - 203 .

Norden AGW, Rodriguez-Cutillas P, Unwin RJ ( 2007 ) . Clinical Urinary Peptidomics: Learning to Walk Before We Can Run . Clinical Chemistry vol. 53 , ( 3 ) 375 - 376 .

Cutillas PR, Vanhaesebroeck B ( 2007 ) . Profiling protein expression by label-free quantitative mass Spectrometry . MOLECULAR & CELLULAR PROTEOMICS vol. 6 , ( 8 ) 14 - 14 .

Cutillas PR, Khwaja A, Graupera M, Pearce W, Gharbi S, Waterfield M, Vanhaesebroeck B ( 2006 ) . Ultrasensitive and absolute quantification of the phosphoinositide 3-kinase/Akt signal transduction pathway by mass spectrometry . Proceedings of the National Academy of Sciences vol. 103 , ( 24 ) 8959 - 8964 .

Cutillas PR, Geering B, Waterfield MD, Vanhaesebroeck B ( 2005 ) . Quantification of Gel-separated Proteins and Their Phosphorylation Sites by LC-MS Using Unlabeled Internal Standards . Molecular &amp; Cellular Proteomics vol. 4 , ( 8 ) 1038 - 1051 .

Cutillas PR, Biber J, Marks J, Jacob R, Stieger B, Cramer R, Waterfield M, Burlingame AL et al. ( 2005 ) . Proteomic analysis of plasma membrane vesicles isolated from the rat renal cortex . PROTEOMICS vol. 5 , ( 1 ) 101 - 112 .

Norden AGW, Sharratt P, Cutillas PR, Cramer R, Gardner SC, Unwin RJ ( 2004 ) . Quantitative amino acid and proteomic analysis: Very low excretion of polypeptides &gt;750 Da in normal urine . Kidney International . vol. 66 , 1994 - 2003 .

Cutillas PR, Chalkley RJ, Hansen KC, Cramer R, Norden AGW, Waterfield MD, Burlingame AL, Unwin RJ ( 2004 ) . The urinary proteome in Fanconi syndrome implies specificity in the reabsorption of proteins by renal proximal tubule cells . American Journal of Physiology-Renal Physiology vol. 287 , ( 3 ) F353 - F364 .

Cutillas P, Burlingame A, Unwin R ( 2004 ) . Proteomic Strategies and Their Application in Studies of Renal Function . Physiology vol. 19 , ( 3 ) 114 - 119 .

CUTILLAS PR, NORDEN AGW, CRAMER R, BURLINGAME AL, UNWIN RJ ( 2003 ) . Detection and analysis of urinary peptides by on-line liquid chromatography and mass spectrometry: application to patients with renal Fanconi syndrome . Clinical Science vol. 104 , ( 5 ) 483 - 490 .

Cutillas PR, Norden AGW, Cramer R, Burlingame AL, Unwin RJ ( 2003 ) . Urinary Proteomics of Renal Fanconi Syndrome . 155 - 169 .

Cutillas PR, Cramer R, Unwin R, Burlingame A ( 2002 ) . A column-switching LC-MS/MS set-up for the 'clean-up', separation and characterization of peptides present in small volumes of biological fluids . Proceedings 50th Asms Conference on Mass Spectrometry and Allied Topics . 363 - 364 .

Thongboonkerd V, Cutillas PR, Unwin RJ, Schaub S, Nickerson P, Haubitz M, Mischak H, Nedelkov D et al. . Proteomics of Human Urine . Proteomics of Human Body Fluids , Humana Press